RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CDHR1Q96JP9 859 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 ZNF558Q96NG5 402 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 UBAC1Q9BSL1 405 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 TMEM117Q9H0C3 514 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 IL25Q9H293 177 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 SPG21Q9NZD8 308 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 FBXL21Q9UKT6 434 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 ST3GAL5Q9UNP4 418 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 DENND4AQ7Z401 1863 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 CHD6Q8TD26 2715 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 ITGB5P18084 799 aa18.7■□□□□ 0.58
CLN3-264ENST00000637985 CHMLP26374 656 aa18.7■□□□□ 0.58
CLN3-264ENST00000637985 PBX3P40426 434 aa18.7■□□□□ 0.58
CLN3-264ENST00000637985 MAP1BP46821 2468 aaKnown RBP18.7■□□□□ 0.58
CLN3-264ENST00000637985 SEC23AQ15436 765 aa18.7■□□□□ 0.58
CLN3-264ENST00000637985 RSPO4Q2I0M5 234 aaPredicted RBP18.7■□□□□ 0.58
CLN3-264ENST00000637985 CASD1Q96PB1 797 aa18.7■□□□□ 0.58
CLN3-264ENST00000637985 HINFPQ9BQA5 517 aa18.7■□□□□ 0.58
CLN3-264ENST00000637985 CDHR5Q9HBB8 845 aa18.7■□□□□ 0.58
CLN3-264ENST00000637985 DZANK1Q9NVP4 752 aa18.7■□□□□ 0.58
CLN3-264ENST00000637985 GPR179Q6PRD1 2367 aa18.7■□□□□ 0.58
CLN3-264ENST00000637985 PIK3CDO00329 1044 aa18.69■□□□□ 0.58
CLN3-264ENST00000637985 PLCB4Q15147 1175 aa18.69■□□□□ 0.58
CLN3-264ENST00000637985 ODR4Q5SWX8 454 aa18.69■□□□□ 0.58
CLN3-264ENST00000637985 USP17L6PQ6QN14 398 aa18.69■□□□□ 0.58
CLN3-264ENST00000637985 MTHFD1LQ6UB35 978 aa18.69■□□□□ 0.58
CLN3-264ENST00000637985 SMARCC2Q8TAQ2 1214 aa18.69■□□□□ 0.58
CLN3-264ENST00000637985 ACSF2Q96CM8 615 aaPredicted RBP18.69■□□□□ 0.58
CLN3-264ENST00000637985 KCNK12Q9HB15 430 aa18.69■□□□□ 0.58
CLN3-264ENST00000637985 RNF19AQ9NV58 838 aa18.69■□□□□ 0.58
CLN3-264ENST00000637985 GINS2Q9Y248 185 aa18.69■□□□□ 0.58
CLN3-264ENST00000637985 MEIS2O14770 477 aa18.68■□□□□ 0.58
CLN3-264ENST00000637985 GPR182O15218 404 aa18.68■□□□□ 0.58
CLN3-264ENST00000637985 GRM4Q14833 912 aa18.68■□□□□ 0.58
CLN3-264ENST00000637985 ZC3H14Q6PJT7 736 aaKnown RBP18.68■□□□□ 0.58
CLN3-264ENST00000637985 OTOP3Q7RTS5 596 aa18.68■□□□□ 0.58
CLN3-264ENST00000637985 SLC39A11Q8N1S5 342 aa18.68■□□□□ 0.58
CLN3-264ENST00000637985 LRRC43Q8N309 656 aa18.68■□□□□ 0.58
CLN3-264ENST00000637985 FEZF2Q8TBJ5 459 aa18.68■□□□□ 0.58
CLN3-264ENST00000637985 RIN2Q8WYP3 895 aaPredicted RBP18.68■□□□□ 0.58
CLN3-264ENST00000637985 AZI2Q9H6S1 392 aa18.68■□□□□ 0.58
CLN3-264ENST00000637985 WNT16Q9UBV4 365 aa18.68■□□□□ 0.58
CLN3-264ENST00000637985 HOXA2O43364 376 aa18.67■□□□□ 0.58
CLN3-264ENST00000637985 TRDNQ13061 729 aa18.67■□□□□ 0.58
CLN3-264ENST00000637985 DSC3Q14574 896 aa18.67■□□□□ 0.58
CLN3-264ENST00000637985 PLPPR4Q7Z2D5 763 aa18.67■□□□□ 0.58
CLN3-264ENST00000637985 PKD2L1Q9P0L9 805 aa18.67■□□□□ 0.58
CLN3-264ENST00000637985 U3KPZ7 1027 aaPredicted RBP18.67■□□□□ 0.58
CLN3-264ENST00000637985 KRBA1A5PL33 1030 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 CXCL14O95715 111 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 SP9P0CG40 484 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 EPCAMP16422 314 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 KLRC1P26715 233 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 MTMR1Q13613 665 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 TMC5Q6UXY8 1006 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 KIAA0319LQ8IZA0 1049 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 SUMF1Q8NBK3 374 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 SLC22A17Q8WUG5 538 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 CUL5Q93034 780 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 JPH1Q9HDC5 661 aaPredicted RBP18.66■□□□□ 0.58
CLN3-264ENST00000637985 UBIAD1Q9Y5Z9 338 aa18.66■□□□□ 0.58
CLN3-264ENST00000637985 STK25O00506 426 aa18.65■□□□□ 0.58
CLN3-264ENST00000637985 SGSM2O43147 1006 aa18.65■□□□□ 0.58
CLN3-264ENST00000637985 NARSO43776 548 aaKnown RBP18.65■□□□□ 0.58
CLN3-264ENST00000637985 PTH1RQ03431 593 aa18.65■□□□□ 0.58
CLN3-264ENST00000637985 TBC1D8BQ0IIM8 1120 aa18.65■□□□□ 0.58
CLN3-264ENST00000637985 GPR149Q86SP6 731 aa18.65■□□□□ 0.58
CLN3-264ENST00000637985 FAM228AQ86W67 206 aa18.65■□□□□ 0.58
CLN3-264ENST00000637985 IGSF9Q9P2J2 1179 aa18.65■□□□□ 0.58
CLN3-264ENST00000637985 IRAK3Q9Y616 596 aa18.65■□□□□ 0.58
CLN3-264ENST00000637985 CHD8Q9HCK8 2581 aa18.65■□□□□ 0.58
CLN3-264ENST00000637985 CACNA1IQ9P0X4 2223 aa18.65■□□□□ 0.58
CLN3-264ENST00000637985 BAHCC1Q9P281 2608 aa18.64■□□□□ 0.57
CLN3-264ENST00000637985 MAFGO15525 162 aa18.64■□□□□ 0.57
CLN3-264ENST00000637985 CYP21A2P08686 494 aa18.64■□□□□ 0.57
CLN3-264ENST00000637985 STAT5BP51692 787 aa18.64■□□□□ 0.57
CLN3-264ENST00000637985 ATXN1P54253 815 aaKnown RBP18.64■□□□□ 0.57
CLN3-264ENST00000637985 BMS1Q14692 1282 aaKnown RBP18.64■□□□□ 0.57
CLN3-264ENST00000637985 ST3GAL2Q16842 350 aa18.64■□□□□ 0.57
CLN3-264ENST00000637985 CCDC149Q6ZUS6 474 aa18.64■□□□□ 0.57
CLN3-264ENST00000637985 DLGAP2Q9P1A6 1054 aa18.64■□□□□ 0.57
CLN3-264ENST00000637985 SLC9A2Q9UBY0 812 aa18.64■□□□□ 0.57
CLN3-264ENST00000637985 EVPLQ92817 2033 aa18.63■□□□□ 0.57
CLN3-264ENST00000637985 CFHP08603 1231 aa18.63■□□□□ 0.57
CLN3-264ENST00000637985 SDHBP21912 280 aa18.63■□□□□ 0.57
CLN3-264ENST00000637985 CRYBB1P53674 252 aaPredicted RBP18.63■□□□□ 0.57
CLN3-264ENST00000637985 CYB5R4Q7L1T6 521 aa18.63■□□□□ 0.57
CLN3-264ENST00000637985 CABP7Q86V35 215 aa18.63■□□□□ 0.57
CLN3-264ENST00000637985 ABI1Q8IZP0 508 aa18.63■□□□□ 0.57
CLN3-264ENST00000637985 ZBP1Q9H171 429 aa18.63■□□□□ 0.57
CLN3-264ENST00000637985 SFXN1Q9H9B4 322 aa18.63■□□□□ 0.57
CLN3-264ENST00000637985 JADE2Q9NQC1 790 aa18.63■□□□□ 0.57
CLN3-264ENST00000637985 USP24Q9UPU5 2620 aa18.63■□□□□ 0.57
CLN3-264ENST00000637985 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.62■□□□□ 0.57
CLN3-264ENST00000637985 CA8P35219 290 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 ACTR2P61160 394 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 TROAPQ12815 778 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 GIT2Q14161 759 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 CLLU1OSQ5K130 101 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 KIAA0319Q5VV43 1072 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms