RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 RGS3P49796 1198 aa8.96□□□□□ -0.98
SS18-214ENST00000580003 LRRC32Q14392 662 aa8.96□□□□□ -0.98
SS18-214ENST00000580003 MAFO75444 373 aaPredicted RBP8.95□□□□□ -0.98
SS18-214ENST00000580003 LSP1P33241 339 aa8.95□□□□□ -0.98
SS18-214ENST00000580003 SMAD3P84022 425 aaKnown RBP8.95□□□□□ -0.98
SS18-214ENST00000580003 EIF4HQ15056 248 aaKnown RBP8.95□□□□□ -0.98
SS18-214ENST00000580003 ZMAT1Q5H9K5 638 aa8.95□□□□□ -0.98
SS18-214ENST00000580003 TMEM200BQ69YZ2 307 aa8.95□□□□□ -0.98
SS18-214ENST00000580003 CXorf38Q8TB03 319 aa8.95□□□□□ -0.98
SS18-214ENST00000580003 RTF1Q92541 710 aaKnown RBP8.95□□□□□ -0.98
SS18-214ENST00000580003 RPGRQ92834 1020 aaKnown RBP8.95□□□□□ -0.98
SS18-214ENST00000580003 TTC1Q99614 292 aa8.95□□□□□ -0.98
SS18-214ENST00000580003 ZMAT4Q9H898 229 aa8.95□□□□□ -0.98
SS18-214ENST00000580003 JADE2Q9NQC1 790 aa8.95□□□□□ -0.98
SS18-214ENST00000580003 LAMTOR5O43504 91 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 TGM5O43548 720 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 APOL3O95236 402 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 ZNF888P0CJ79 500 aaPredicted RBP8.94□□□□□ -0.98
SS18-214ENST00000580003 CNGA1P29973 690 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 MEOX1P50221 254 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 RRADP55042 308 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 PPP2CBP62714 309 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 PPP2CAP67775 309 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 STRN3Q13033 797 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 GPR158Q5T848 1215 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 RTKN2Q8IZC4 609 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 IFT22Q9H7X7 185 aa8.94□□□□□ -0.98
SS18-214ENST00000580003 MAFGO15525 162 aa8.93□□□□□ -0.98
SS18-214ENST00000580003 PLATP00750 562 aa8.93□□□□□ -0.98
SS18-214ENST00000580003 BPIP17213 487 aa8.93□□□□□ -0.98
SS18-214ENST00000580003 BCAR1P56945 870 aa8.93□□□□□ -0.98
SS18-214ENST00000580003 ADCY2Q08462 1091 aa8.93□□□□□ -0.98
SS18-214ENST00000580003 ATP13A4Q4VNC1 1196 aa8.93□□□□□ -0.98
SS18-214ENST00000580003 BDH2Q9BUT1 245 aa8.93□□□□□ -0.98
SS18-214ENST00000580003 EMC7Q9NPA0 242 aa8.93□□□□□ -0.98
SS18-214ENST00000580003 USP36Q9P275 1121 aaKnown RBP8.93□□□□□ -0.98
SS18-214ENST00000580003 PTPN22Q9Y2R2 807 aa8.93□□□□□ -0.98
SS18-214ENST00000580003 CADPSQ9ULU8 1353 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 ZEB2O60315 1214 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 RAB11FIP3O75154 756 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 PRPF6O94906 941 aaKnown RBP8.92□□□□□ -0.98
SS18-214ENST00000580003 CPEP16870 476 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 SYN1P17600 705 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 PHC1P78364 1004 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 NOLC1Q14978 699 aaKnown RBP eCLIP8.92□□□□□ -0.98
SS18-214ENST00000580003 DDB1Q16531 1140 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 TBC1D10BQ4KMP7 808 aaPredicted RBP8.92□□□□□ -0.98
SS18-214ENST00000580003 KRT26Q7Z3Y9 468 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 ZNF610Q8N9Z0 462 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 MYL10Q9BUA6 226 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 POFUT1Q9H488 388 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 KCMF1Q9P0J7 381 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 SAE1Q9UBE0 346 aaPredicted RBP8.92□□□□□ -0.98
SS18-214ENST00000580003 SLC4A7Q9Y6M7 1214 aa8.92□□□□□ -0.98
SS18-214ENST00000580003 FOXD2O60548 495 aaPredicted RBP8.91□□□□□ -0.98
SS18-214ENST00000580003 EPHB4P54760 987 aa8.91□□□□□ -0.98
SS18-214ENST00000580003 PLP2Q04941 152 aa8.91□□□□□ -0.98
SS18-214ENST00000580003 MYBPC3Q14896 1274 aa8.91□□□□□ -0.98
SS18-214ENST00000580003 TERF2Q15554 542 aa8.91□□□□□ -0.98
SS18-214ENST00000580003 DGKDQ16760 1214 aa8.91□□□□□ -0.98
SS18-214ENST00000580003 ESPNLQ6ZVH7 1005 aa8.91□□□□□ -0.98
SS18-214ENST00000580003 FILIP1Q7Z7B0 1213 aa8.91□□□□□ -0.98
SS18-214ENST00000580003 OR5AN1Q8NGI8 311 aa8.91□□□□□ -0.98
SS18-214ENST00000580003 SLC5A5Q92911 643 aa8.91□□□□□ -0.98
SS18-214ENST00000580003 MSRAQ9UJ68 235 aa8.91□□□□□ -0.98
SS18-214ENST00000580003 APOBEC2Q9Y235 224 aaKnown RBP8.91□□□□□ -0.98
SS18-214ENST00000580003 NEMP1O14524 444 aa8.9□□□□□ -0.98
SS18-214ENST00000580003 VIL1P09327 827 aaKnown RBP8.9□□□□□ -0.98
SS18-214ENST00000580003 STAT5BP51692 787 aa8.9□□□□□ -0.98
SS18-214ENST00000580003 PCOLCEQ15113 449 aa8.9□□□□□ -0.98
SS18-214ENST00000580003 RNF187Q5TA31 235 aaPredicted RBP8.9□□□□□ -0.98
SS18-214ENST00000580003 TRIM68Q6AZZ1 485 aa8.9□□□□□ -0.98
SS18-214ENST00000580003 KIAA1841Q6NSI8 718 aa8.9□□□□□ -0.98
SS18-214ENST00000580003 GLB1LQ6UWU2 654 aa8.9□□□□□ -0.98
SS18-214ENST00000580003 LARP4Q71RC2 724 aaKnown RBP eCLIP8.9□□□□□ -0.98
SS18-214ENST00000580003 STRA8Q7Z7C7 330 aa8.9□□□□□ -0.98
SS18-214ENST00000580003 FAM184BQ9ULE4 1060 aa8.9□□□□□ -0.98
SS18-214ENST00000580003 NPEPPSL1A6NEC2 478 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 BRINP1O60477 761 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 CELA3BP08861 270 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 MRE11P49959 708 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 ZNF827Q17R98 1081 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 BROXQ5VW32 411 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 FRMD7Q6ZUT3 714 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 FERMT2Q96AC1 680 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 KIAA1683Q9H0B3 1180 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 SEC61A2Q9H9S3 476 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 SPC25Q9HBM1 224 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 MAGEL2Q9UJ55 1249 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 SYNPO2Q9UMS6 1093 aa8.89□□□□□ -0.99
SS18-214ENST00000580003 NOC2LQ9Y3T9 749 aaKnown RBP8.89□□□□□ -0.99
SS18-214ENST00000580003 ST20-MTHFSA0A0A6YYL1 179 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 DNAJC6O75061 913 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 ULK1O75385 1050 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 CNOT4O95628 575 aaKnown RBP8.88□□□□□ -0.99
SS18-214ENST00000580003 ID4P47928 161 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 SESN2P58004 480 aaPredicted RBP8.88□□□□□ -0.99
SS18-214ENST00000580003 NFKB2Q00653 900 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 AGBL4Q5VU57 503 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 SLFN13Q68D06 897 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms