RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 FAM50BQ9Y247 325 aa11.4□□□□□ -0.58
SS18-210ENST00000578700 EMSYQ7Z589 1322 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 MYH15Q9Y2K3 1946 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 FAM237AA0A1B0GTK4 181 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 M0R2N6 131 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 TREHO43280 583 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 CCNT1O60563 726 aaKnown RBP11.39□□□□□ -0.59
SS18-210ENST00000578700 PPFIA4O75335 1185 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 XRCC6P12956 609 aaKnown RBP eCLIP11.39□□□□□ -0.59
SS18-210ENST00000578700 LONP1P36776 959 aaKnown RBP11.39□□□□□ -0.59
SS18-210ENST00000578700 TYRO3Q06418 890 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 STX1AQ16623 288 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 RALGAPA2Q2PPJ7 1873 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 UVSSAQ2YD98 709 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 PLEKHG4Q58EX7 1191 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 EARS2Q5JPH6 523 aaKnown RBP11.39□□□□□ -0.59
SS18-210ENST00000578700 CELF3Q5SZQ8 465 aaKnown RBP11.39□□□□□ -0.59
SS18-210ENST00000578700 JAKMIP3Q5VZ66 844 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 SHC4Q6S5L8 630 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 RBM43Q6ZSC3 357 aaKnown RBP11.39□□□□□ -0.59
SS18-210ENST00000578700 CNNM3Q8NE01 707 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 RASGRP4Q8TDF6 673 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 TOP1MTQ969P6 601 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 EMID1Q96A84 441 aaPredicted RBP11.39□□□□□ -0.59
SS18-210ENST00000578700 PABPC5Q96DU9 382 aaKnown RBP11.39□□□□□ -0.59
SS18-210ENST00000578700 CLIC6Q96NY7 704 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 CSRNP2Q9H175 543 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 USP25Q9UHP3 1055 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 CFAP54Q96N23 3096 aa11.39□□□□□ -0.59
SS18-210ENST00000578700 POTEB3A0JP26 581 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 VWA3AA6NCI4 1184 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 SPDYE3A6NKU9 549 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 MARCH6O60337 910 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 NEMFO60524 1076 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 FOSP01100 380 aaPredicted RBP11.38□□□□□ -0.59
SS18-210ENST00000578700 SMIM10L2AP0DMW4 78 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 SMIM10L2BP0DMW5 78 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 GCFC2P16383 781 aaKnown RBP11.38□□□□□ -0.59
SS18-210ENST00000578700 HOXA13P31271 388 aaPredicted RBP11.38□□□□□ -0.59
SS18-210ENST00000578700 CTNNB1P35222 781 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 PRPHP41219 470 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 SP2Q02086 613 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 ZP2Q05996 745 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 AP3B2Q13367 1082 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 TMEM266Q2M3C6 531 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 LETM2Q2VYF4 491 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 POTEBQ6S5H4 581 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 HFE2Q6ZVN8 426 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 RPAINQ86UA6 219 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 SERINC5Q86VE9 423 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 FCHSD1Q86WN1 690 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 ADHFE1Q8IWW8 467 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 CEP57L1Q8IYX8 460 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 FIBCD1Q8N539 461 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 RNF214Q8ND24 703 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 RASSF8Q8NHQ8 419 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 SP7Q8TDD2 431 aaPredicted RBP11.38□□□□□ -0.59
SS18-210ENST00000578700 TBCKQ8TEA7 893 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 IFIH1Q9BYX4 1025 aaKnown RBP11.38□□□□□ -0.59
SS18-210ENST00000578700 RAB34Q9BZG1 259 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 MAF1Q9H063 256 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 RBSNQ9H1K0 784 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 RNPEPQ9H4A4 650 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 EHMT1Q9H9B1 1298 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 ANO10Q9NW15 660 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 HPSEQ9Y251 543 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 ATG2AQ2TAZ0 1938 aa11.38□□□□□ -0.59
SS18-210ENST00000578700 KAT6AQ92794 2004 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.37□□□□□ -0.59
SS18-210ENST00000578700 H3BRB1 525 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 NOP56O00567 594 aaKnown RBP11.37□□□□□ -0.59
SS18-210ENST00000578700 RGS20O76081 388 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 OR52Z1P0C646 297 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 IRS1P35568 1242 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 UTP14CQ5TAP6 766 aaKnown RBP11.37□□□□□ -0.59
SS18-210ENST00000578700 KRBA2Q6ZNG9 492 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 ELOA2Q8IYF1 753 aaPredicted RBP11.37□□□□□ -0.59
SS18-210ENST00000578700 FAM200AQ8TCP9 573 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 AK8Q96MA6 479 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 PDCD2LQ9BRP1 358 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 C16orf70Q9BSU1 422 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 TUT1Q9H6E5 874 aaKnown RBP11.37□□□□□ -0.59
SS18-210ENST00000578700 BCAS3Q9H6U6 928 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 SETD4Q9NVD3 440 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 CCDC39Q9UFE4 941 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 MUTYHQ9UIF7 546 aa11.37□□□□□ -0.59
SS18-210ENST00000578700 GOLGA6L19H0YKK7 550 aa11.36□□□□□ -0.59
SS18-210ENST00000578700 GRM6O15303 877 aa11.36□□□□□ -0.59
SS18-210ENST00000578700 POLR2DO15514 142 aaKnown RBP11.36□□□□□ -0.59
SS18-210ENST00000578700 PPP1R11O60927 126 aaPredicted RBP11.36□□□□□ -0.59
SS18-210ENST00000578700 SMC2O95347 1197 aa11.36□□□□□ -0.59
SS18-210ENST00000578700 LGALS2P05162 132 aa11.36□□□□□ -0.59
SS18-210ENST00000578700 UBA1P22314 1058 aaKnown RBP11.36□□□□□ -0.59
SS18-210ENST00000578700 CCND2P30279 289 aa11.36□□□□□ -0.59
SS18-210ENST00000578700 GTF2F1P35269 517 aaKnown RBP eCLIP11.36□□□□□ -0.59
SS18-210ENST00000578700 UBA7P41226 1012 aa11.36□□□□□ -0.59
SS18-210ENST00000578700 TPM4P67936 248 aa11.36□□□□□ -0.59
SS18-210ENST00000578700 SP4Q02446 784 aa11.36□□□□□ -0.59
SS18-210ENST00000578700 DLX2Q07687 328 aaPredicted RBP11.36□□□□□ -0.59
SS18-210ENST00000578700 PGM5Q15124 567 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms