RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 DNAH14Q0VDD8 3507 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 ERICH2A1L162 156 aa18.52■□□□□ 0.56
CLK3-223ENST00000568488 FAM189BP81408 668 aa18.52■□□□□ 0.56
CLK3-223ENST00000568488 TRDNQ13061 729 aa18.52■□□□□ 0.56
CLK3-223ENST00000568488 TDGQ13569 410 aa18.52■□□□□ 0.56
CLK3-223ENST00000568488 BMS1Q14692 1282 aaKnown RBP18.52■□□□□ 0.56
CLK3-223ENST00000568488 FAM43BQ6ZT52 329 aaPredicted RBP18.52■□□□□ 0.56
CLK3-223ENST00000568488 PLPPR4Q7Z2D5 763 aa18.52■□□□□ 0.56
CLK3-223ENST00000568488 RRP36Q96EU6 259 aaKnown RBP18.52■□□□□ 0.56
CLK3-223ENST00000568488 ELAC1Q9H777 363 aaKnown RBP18.52■□□□□ 0.56
CLK3-223ENST00000568488 JADE2Q9NQC1 790 aa18.52■□□□□ 0.56
CLK3-223ENST00000568488 MAFGO15525 162 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 RFX1P22670 979 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 ACTR2P61160 394 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 KIZQ2M2Z5 673 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 TMC5Q6UXY8 1006 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 KIAA0319LQ8IZA0 1049 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 LRRC43Q8N309 656 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 RNF169Q8NCN4 708 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 CYP2W1Q8TAV3 490 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 RIN2Q8WYP3 895 aaPredicted RBP18.51■□□□□ 0.55
CLK3-223ENST00000568488 OSMRQ99650 979 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 SEC63Q9UGP8 760 aaKnown RBP18.51■□□□□ 0.55
CLK3-223ENST00000568488 CACNA1BQ00975 2339 aa18.51■□□□□ 0.55
CLK3-223ENST00000568488 HOXA2O43364 376 aa18.5■□□□□ 0.55
CLK3-223ENST00000568488 METAP2P50579 478 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLK3-223ENST00000568488 TROAPQ12815 778 aa18.5■□□□□ 0.55
CLK3-223ENST00000568488 WTAPQ15007 396 aa18.5■□□□□ 0.55
CLK3-223ENST00000568488 CATIPQ7Z7H3 387 aa18.5■□□□□ 0.55
CLK3-223ENST00000568488 FAM228AQ86W67 206 aa18.5■□□□□ 0.55
CLK3-223ENST00000568488 SDF4Q9BRK5 362 aa18.5■□□□□ 0.55
CLK3-223ENST00000568488 LNPKQ9C0E8 428 aa18.5■□□□□ 0.55
CLK3-223ENST00000568488 PSTPIP2Q9H939 334 aa18.5■□□□□ 0.55
CLK3-223ENST00000568488 DZANK1Q9NVP4 752 aa18.5■□□□□ 0.55
CLK3-223ENST00000568488 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.49■□□□□ 0.55
CLK3-223ENST00000568488 SPDYE4A6NLX3 237 aa18.49■□□□□ 0.55
CLK3-223ENST00000568488 NT5C1B-RDH14C9J2C7 533 aa18.49■□□□□ 0.55
CLK3-223ENST00000568488 EPCAMP16422 314 aa18.49■□□□□ 0.55
CLK3-223ENST00000568488 UBE2SQ16763 222 aa18.49■□□□□ 0.55
CLK3-223ENST00000568488 SLC39A11Q8N1S5 342 aa18.49■□□□□ 0.55
CLK3-223ENST00000568488 AUTS2Q8WXX7 1259 aa18.49■□□□□ 0.55
CLK3-223ENST00000568488 RNF19AQ9NV58 838 aa18.49■□□□□ 0.55
CLK3-223ENST00000568488 DUSP12Q9UNI6 340 aa18.49■□□□□ 0.55
CLK3-223ENST00000568488 SPDYE3A6NKU9 549 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 HBP1O60381 514 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 CRYBB1P53674 252 aaPredicted RBP18.48■□□□□ 0.55
CLK3-223ENST00000568488 DSC3Q14574 896 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 OTOP3Q7RTS5 596 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 CABP7Q86V35 215 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 DCLK2Q8N568 766 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 FEZF2Q8TBJ5 459 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 KCNK12Q9HB15 430 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 KCNH7Q9NS40 1196 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 PCDHA6Q9UN73 950 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 PCDHA8Q9Y5H6 950 aa18.48■□□□□ 0.55
CLK3-223ENST00000568488 BACH1O14867 736 aa18.47■□□□□ 0.55
CLK3-223ENST00000568488 CFHP08603 1231 aa18.47■□□□□ 0.55
CLK3-223ENST00000568488 ZSCAN20P17040 1043 aaPredicted RBP18.47■□□□□ 0.55
CLK3-223ENST00000568488 ALDH7A1P49419 539 aaKnown RBP18.47■□□□□ 0.55
CLK3-223ENST00000568488 VPS52Q8N1B4 723 aa18.47■□□□□ 0.55
CLK3-223ENST00000568488 TMEM169Q96HH4 297 aa18.47■□□□□ 0.55
CLK3-223ENST00000568488 FRYLO94915 3013 aa18.47■□□□□ 0.55
CLK3-223ENST00000568488 NCOR2Q9Y618 2525 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 HIP1O00291 1037 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 NARSO43776 548 aaKnown RBP18.46■□□□□ 0.55
CLK3-223ENST00000568488 VTNP04004 478 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 SLC26A2P50443 739 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 BCAR1P56945 870 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 SART3Q15020 963 aaKnown RBP18.46■□□□□ 0.55
CLK3-223ENST00000568488 SPECC1Q5M775 1068 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 CCDC149Q6ZUS6 474 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 METTL13Q8N6R0 699 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 CTCFLQ8NI51 663 aaPredicted RBP18.46■□□□□ 0.55
CLK3-223ENST00000568488 HELQQ8TDG4 1101 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 RUBCNQ92622 972 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 MXRA8Q9BRK3 442 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 SPZ1Q9BXG8 430 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 DLL3Q9NYJ7 618 aa18.46■□□□□ 0.55
CLK3-223ENST00000568488 RSPO4Q2I0M5 234 aaPredicted RBP18.45■□□□□ 0.54
CLK3-223ENST00000568488 ZNF484Q5JVG2 852 aa18.45■□□□□ 0.54
CLK3-223ENST00000568488 FAM160B1Q5W0V3 765 aa18.45■□□□□ 0.54
CLK3-223ENST00000568488 ZC3H14Q6PJT7 736 aaKnown RBP18.45■□□□□ 0.54
CLK3-223ENST00000568488 TRMT1LQ7Z2T5 733 aaKnown RBP18.45■□□□□ 0.54
CLK3-223ENST00000568488 RALYLQ86SE5 291 aaKnown RBP18.45■□□□□ 0.54
CLK3-223ENST00000568488 GPR149Q86SP6 731 aa18.45■□□□□ 0.54
CLK3-223ENST00000568488 ECHDC2Q86YB7 292 aa18.45■□□□□ 0.54
CLK3-223ENST00000568488 SLC22A17Q8WUG5 538 aa18.45■□□□□ 0.54
CLK3-223ENST00000568488 DDX39AO00148 427 aaKnown RBP18.44■□□□□ 0.54
CLK3-223ENST00000568488 CLLU1OSQ5K130 101 aa18.44■□□□□ 0.54
CLK3-223ENST00000568488 B4GALNT3Q6L9W6 998 aa18.44■□□□□ 0.54
CLK3-223ENST00000568488 CKAP2LQ8IYA6 745 aa18.44■□□□□ 0.54
CLK3-223ENST00000568488 CMTR1Q8N1G2 835 aaKnown RBP18.44■□□□□ 0.54
CLK3-223ENST00000568488 MYL10Q9BUA6 226 aa18.44■□□□□ 0.54
CLK3-223ENST00000568488 ZBP1Q9H171 429 aa18.44■□□□□ 0.54
CLK3-223ENST00000568488 CA14Q9ULX7 337 aa18.44■□□□□ 0.54
CLK3-223ENST00000568488 NFASCO94856 1347 aa18.44■□□□□ 0.54
CLK3-223ENST00000568488 KRBA1A5PL33 1030 aa18.43■□□□□ 0.54
CLK3-223ENST00000568488 GPR32O75388 356 aa18.43■□□□□ 0.54
CLK3-223ENST00000568488 ATG7O95352 703 aa18.43■□□□□ 0.54
CLK3-223ENST00000568488 KIF5BP33176 963 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms