RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 PCDHA12Q9UN75 941 aa20.99■□□□□ 0.95
CLN3-227ENST00000567495 NOC2LQ9Y3T9 749 aaKnown RBP20.99■□□□□ 0.95
CLN3-227ENST00000567495 EPOPA6NHQ4 379 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 NLRP11P59045 1033 aaKnown RBP20.98■□□□□ 0.95
CLN3-227ENST00000567495 TMEM266Q2M3C6 531 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 MTERF2Q49AM1 385 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 C4orf19Q8IY42 314 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 LRRC71Q8N4P6 559 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 ADAMTS10Q9H324 1103 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 ZSWIM4Q9H7M6 989 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 CDHR5Q9HBB8 845 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 C1orf112Q9NSG2 853 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 ST3GAL5Q9UNP4 418 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 RWDD3Q9Y3V2 267 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 MTCH2Q9Y6C9 303 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 A0A0C4DFX4 3053 aa20.98■□□□□ 0.95
CLN3-227ENST00000567495 IGKV6-21A0A0C4DH24 114 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 RFXAPO00287 272 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 EIF4BP23588 611 aaKnown RBP20.97■□□□□ 0.95
CLN3-227ENST00000567495 GUCY1B3Q02153 619 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 SPIRE1Q08AE8 756 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 GRB10Q13322 594 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 ANO5Q75V66 913 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 OTUD6AQ7L8S5 288 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 RTN4RL1Q86UN2 441 aaPredicted RBP20.97■□□□□ 0.95
CLN3-227ENST00000567495 FIBCD1Q8N539 461 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 FBXO22Q8NEZ5 403 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 TMEM40Q8WWA1 233 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 LINC01599Q8WXQ3 324 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 TBC1D32Q96NH3 1257 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 OSMRQ99650 979 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 TMX1Q9H3N1 280 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 CYP26B1Q9NR63 512 aa20.97■□□□□ 0.95
CLN3-227ENST00000567495 MICAL3Q7RTP6 2002 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 DENND3A2RUS2 1198 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 MAFO75444 373 aaPredicted RBP20.96■□□□□ 0.95
CLN3-227ENST00000567495 DGKIO75912 1065 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 TRAPPC10P48553 1259 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 GNL2Q13823 731 aaKnown RBP20.96■□□□□ 0.95
CLN3-227ENST00000567495 NCAPH2Q6IBW4 605 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 SLC24A5Q71RS6 500 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 CRIPAKQ8N1N5 446 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 NEK9Q8TD19 979 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 SLC7A3Q8WY07 619 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 PPM1EQ8WY54 764 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 SCLT1Q96NL6 688 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 MTMR9Q96QG7 549 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 CEP89Q96ST8 783 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 LXNQ9BS40 222 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 TTC12Q9H892 705 aaPredicted RBP20.96■□□□□ 0.95
CLN3-227ENST00000567495 MTUS1Q9ULD2 1270 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 GBF1Q92538 1859 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 COL4A6Q14031 1691 aa20.96■□□□□ 0.95
CLN3-227ENST00000567495 MYH9P35579 1960 aaKnown RBP20.96■□□□□ 0.95
CLN3-227ENST00000567495 LPXNO60711 386 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 RFC5P40937 340 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 SARSP49591 514 aaKnown RBP20.95■□□□□ 0.94
CLN3-227ENST00000567495 GPC3P51654 580 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 EPC2Q52LR7 807 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 FAM228AQ86W67 206 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 NOSTRINQ8IVI9 506 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 ZNF689Q96CS4 500 aaPredicted RBP20.95■□□□□ 0.94
CLN3-227ENST00000567495 CEP170P1Q96L14 293 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 ADAM2Q99965 735 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 C17orf80Q9BSJ5 609 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 RGS18Q9NS28 235 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 LRFN2Q9ULH4 789 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 ADGRA3Q8IWK6 1321 aa20.95■□□□□ 0.94
CLN3-227ENST00000567495 RBAK-RBAKDNI3L0D1 243 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 GAS2O43903 313 aaKnown RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 LYPLA2O95372 231 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 RB1P06400 928 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 DARSP14868 501 aaKnown RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 YWHABP31946 246 aaKnown RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 MCM7P33993 719 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 TXKP42681 527 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 BTG3Q14201 252 aaPredicted RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 CCDC85BQ15834 202 aaPredicted RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 SPRED2Q7Z698 418 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 ZNF410Q86VK4 478 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 TMEM192Q8IY95 271 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 CMTR2Q8IYT2 770 aaKnown RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 ATXN2LQ8WWM7 1075 aaKnown RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 NLRP7Q8WX94 980 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 TMX3Q96JJ7 454 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 PPP1R16BQ96T49 567 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 HSD17B14Q9BPX1 270 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 GCOM2Q9BZD3 368 aaPredicted RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 INO80BQ9C086 356 aaPredicted RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 RC3H2Q9HBD1 1191 aaKnown RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 RGL1Q9NZL6 768 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 SUCLA2Q9P2R7 463 aaPredicted RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 NOL7Q9UMY1 257 aaKnown RBP20.94■□□□□ 0.94
CLN3-227ENST00000567495 PCDHB7Q9Y5E2 793 aa20.94■□□□□ 0.94
CLN3-227ENST00000567495 TMEM150BA6NC51 233 aa20.93■□□□□ 0.94
CLN3-227ENST00000567495 SLITRK3O94933 977 aa20.93■□□□□ 0.94
CLN3-227ENST00000567495 ATP2B1P20020 1258 aa20.93■□□□□ 0.94
CLN3-227ENST00000567495 PTPROQ16827 1216 aa20.93■□□□□ 0.94
CLN3-227ENST00000567495 TPH2Q8IWU9 490 aa20.93■□□□□ 0.94
CLN3-227ENST00000567495 MICALL1Q8N3F8 863 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms