RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.84■■□□□ 1.093e-6■□□□□ 10.1
CLN3-225ENST00000566824 RAB34Q9BZG1 259 aa21.84■■□□□ 1.09
CLN3-225ENST00000566824 ANKEF1Q9NU02 776 aa21.84■■□□□ 1.09
CLN3-225ENST00000566824 DDX19AQ9NUU7 478 aaKnown RBP21.84■■□□□ 1.09
CLN3-225ENST00000566824 SRPRBQ9Y5M8 271 aaKnown RBP21.84■■□□□ 1.09
CLN3-225ENST00000566824 CDY2AQ9Y6F7 541 aa21.84■■□□□ 1.09
CLN3-225ENST00000566824 MAGEB2O15479 319 aa21.83■■□□□ 1.09
CLN3-225ENST00000566824 BMP8BP34820 402 aa21.83■■□□□ 1.09
CLN3-225ENST00000566824 ANP32AP39687 249 aaKnown RBP21.83■■□□□ 1.09
CLN3-225ENST00000566824 RARRES1P49788 294 aa21.83■■□□□ 1.09
CLN3-225ENST00000566824 PPIGQ13427 754 aaKnown RBP eCLIP21.83■■□□□ 1.096e-7■■□□□ 11.8
CLN3-225ENST00000566824 STK38Q15208 465 aa21.83■■□□□ 1.09
CLN3-225ENST00000566824 ZRSR1Q15695 479 aaKnown RBP21.83■■□□□ 1.09
CLN3-225ENST00000566824 KRT79Q5XKE5 535 aa21.83■■□□□ 1.09
CLN3-225ENST00000566824 ZNF365Q70YC5 407 aa21.83■■□□□ 1.09
CLN3-225ENST00000566824 XPNPEP1Q9NQW7 623 aa21.83■■□□□ 1.09
CLN3-225ENST00000566824 E9PMD0 336 aa21.82■■□□□ 1.08
CLN3-225ENST00000566824 CAND2O75155 1236 aa21.82■■□□□ 1.08
CLN3-225ENST00000566824 HAUS3Q68CZ6 603 aa21.82■■□□□ 1.08
CLN3-225ENST00000566824 OTUD6AQ7L8S5 288 aa21.82■■□□□ 1.08
CLN3-225ENST00000566824 EPSTI1Q96J88 318 aa21.82■■□□□ 1.08
CLN3-225ENST00000566824 NACC1Q96RE7 527 aa21.82■■□□□ 1.08
CLN3-225ENST00000566824 DHX33Q9H6R0 707 aaKnown RBP21.82■■□□□ 1.08
CLN3-225ENST00000566824 RBM19Q9Y4C8 960 aaKnown RBP21.82■■□□□ 1.08
CLN3-225ENST00000566824 SPTLC2O15270 562 aa21.81■■□□□ 1.08
CLN3-225ENST00000566824 CXCL10P02778 98 aa21.81■■□□□ 1.08
CLN3-225ENST00000566824 LONP1P36776 959 aaKnown RBP21.81■■□□□ 1.08
CLN3-225ENST00000566824 KIZQ2M2Z5 673 aa21.81■■□□□ 1.08
CLN3-225ENST00000566824 RSPH3Q86UC2 560 aa21.81■■□□□ 1.08
CLN3-225ENST00000566824 CABP7Q86V35 215 aa21.81■■□□□ 1.08
CLN3-225ENST00000566824 TMEM143Q96AN5 459 aa21.81■■□□□ 1.08
CLN3-225ENST00000566824 DBR1Q9UK59 544 aaKnown RBP21.81■■□□□ 1.08
CLN3-225ENST00000566824 MORC2Q9Y6X9 1032 aaPredicted RBP21.81■■□□□ 1.08
CLN3-225ENST00000566824 PTPRSQ13332 1948 aa21.81■■□□□ 1.08
CLN3-225ENST00000566824 GPR32O75388 356 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 XRCC6P12956 609 aaKnown RBP eCLIP21.8■■□□□ 1.08
CLN3-225ENST00000566824 RFC2P35250 354 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 POLGP54098 1239 aaPredicted RBP21.8■■□□□ 1.08
CLN3-225ENST00000566824 LPIN1Q14693 890 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 EMC2Q15006 297 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 TMEM119Q4V9L6 283 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 HYIQ5T013 277 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 KSR1Q8IVT5 923 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 NME8Q8N427 588 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 TMEM40Q8WWA1 233 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 CELF4Q9BZC1 486 aaKnown RBP21.8■■□□□ 1.08
CLN3-225ENST00000566824 ADAMTS10Q9H324 1103 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 AKT3Q9Y243 479 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 TRPV2Q9Y5S1 764 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 YEATS4O95619 227 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 GHRP10912 638 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 MUTP22033 750 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 RFC5P40937 340 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 KARSQ15046 597 aaKnown RBP21.8■■□□□ 1.08
CLN3-225ENST00000566824 FBXO47Q5MNV8 452 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 OTOP2Q7RTS6 562 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 KRI1Q8N9T8 703 aaKnown RBP21.8■■□□□ 1.08
CLN3-225ENST00000566824 AK8Q96MA6 479 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 BHMT2Q9H2M3 363 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 AGO3Q9H9G7 860 aaKnown RBP21.8■■□□□ 1.08
CLN3-225ENST00000566824 POLD4Q9HCU8 107 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 CXXC1Q9P0U4 656 aaPredicted RBP21.8■■□□□ 1.08
CLN3-225ENST00000566824 SUCLA2Q9P2R7 463 aaPredicted RBP21.8■■□□□ 1.08
CLN3-225ENST00000566824 GINS2Q9Y248 185 aa21.8■■□□□ 1.08
CLN3-225ENST00000566824 USO1O60763 962 aaKnown RBP21.79■■□□□ 1.08
CLN3-225ENST00000566824 NLRP11P59045 1033 aaKnown RBP21.79■■□□□ 1.08
CLN3-225ENST00000566824 IER5Q5VY09 327 aa21.79■■□□□ 1.08
CLN3-225ENST00000566824 SYMPKQ92797 1274 aaKnown RBP21.79■■□□□ 1.08
CLN3-225ENST00000566824 GPRC5CQ9NQ84 441 aa21.79■■□□□ 1.08
CLN3-225ENST00000566824 RCOR1Q9UKL0 485 aa21.79■■□□□ 1.08
CLN3-225ENST00000566824 STK24Q9Y6E0 443 aa21.79■■□□□ 1.08
CLN3-225ENST00000566824 MICAL3Q7RTP6 2002 aa21.78■■□□□ 1.08
CLN3-225ENST00000566824 FGBP02675 491 aa21.78■■□□□ 1.08
CLN3-225ENST00000566824 UBA7P41226 1012 aa21.78■■□□□ 1.08
CLN3-225ENST00000566824 GPC3P51654 580 aa21.78■■□□□ 1.08
CLN3-225ENST00000566824 AXDND1Q5T1B0 1012 aaPredicted RBP21.78■■□□□ 1.08
CLN3-225ENST00000566824 MAEAQ7L5Y9 396 aa21.78■■□□□ 1.08
CLN3-225ENST00000566824 RPUSD2Q8IZ73 545 aaKnown RBP21.78■■□□□ 1.08
CLN3-225ENST00000566824 DBF4BQ8NFT6 615 aa21.78■■□□□ 1.08
CLN3-225ENST00000566824 PRPF31Q8WWY3 499 aaKnown RBP21.78■■□□□ 1.08
CLN3-225ENST00000566824 SLC7A3Q8WY07 619 aa21.78■■□□□ 1.08
CLN3-225ENST00000566824 OSMRQ99650 979 aa21.78■■□□□ 1.08
CLN3-225ENST00000566824 NOC2LQ9Y3T9 749 aaKnown RBP21.78■■□□□ 1.08
CLN3-225ENST00000566824 PPME1Q9Y570 386 aa21.78■■□□□ 1.08
CLN3-225ENST00000566824 KDM3AQ9Y4C1 1321 aa21.77■■□□□ 1.08
CLN3-225ENST00000566824 A0A087X0B3 334 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 ARHGEF35A5YM69 484 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 PPP6R2O75170 966 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 EYA4O95677 639 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 PLCG1P19174 1290 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 NCLP19338 710 aaKnown RBP21.77■■□□□ 1.07
CLN3-225ENST00000566824 TMOD1P28289 359 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 CD52P31358 61 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 NUCB2P80303 420 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 PLEKHG4Q58EX7 1191 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 RASIP1Q5U651 963 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 ATL3Q6DD88 541 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 PSRC1Q6PGN9 363 aaPredicted RBP21.77■■□□□ 1.07
CLN3-225ENST00000566824 PADI6Q6TGC4 694 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 RHPN2Q8IUC4 686 aa21.77■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms