RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 TRIM65Q6PJ69 517 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 RHOT2Q8IXI1 618 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 SAMD3Q8N6K7 520 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 DQX1Q8TE96 717 aaKnown RBP6.69□□□□□ -1.34
CLK3-212ENST00000563418 EPAS1Q99814 870 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 ATP6V1HQ9UI12 483 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 CFAP69A5D8W1 941 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 PYGLP06737 847 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 AGAP11Q8TF27 550 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 PTTG2Q9NZH5 202 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 RASSF9O75901 435 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 CPA3P15088 417 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 SMARCA1P28370 1054 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 NFRKBQ6P4R8 1299 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 ARHGAP27Q6ZUM4 889 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.69□□□□□ -1.34
CLK3-212ENST00000563418 EPS8L2Q9H6S3 715 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 SUGCTQ9HAC7 445 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 NCOA5Q9HCD5 579 aaKnown RBP6.69□□□□□ -1.34
CLK3-212ENST00000563418 SAR1AQ9NR31 198 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 CABP1Q9NZU7 370 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 STK17AQ9UEE5 414 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 MKL2Q9ULH7 1088 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 MED14O60244 1454 aa6.69□□□□□ -1.34
CLK3-212ENST00000563418 PPARDQ03181 441 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 NR1I3Q14994 352 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 ADCK5Q3MIX3 580 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 IZUMO2Q6UXV1 221 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 STAG2Q8N3U4 1231 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 PIH1D3Q9NQM4 214 aaKnown RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 STX18Q9P2W9 335 aaKnown RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 AGTPBP1Q9UPW5 1226 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 TMA7Q9Y2S6 64 aaKnown RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 GRM8O00222 908 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 FGGP02679 453 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 DCAF17Q5H9S7 520 aaPredicted RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 AKNAD1Q5T1N1 836 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 ADCK1Q86TW2 530 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 ATPIF1Q9UII2 106 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 L3MBTL1Q9Y468 752 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 M0R2C6 588 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 MT-ND3P03897 115 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 TRIM67Q6ZTA4 783 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 SLF2Q8IX21 1173 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 MREGQ8N565 214 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 ATP8B4Q8TF62 1192 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 SCFD1Q8WVM8 642 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 NACA2Q9H009 215 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 FAM153AQ9UHL3 310 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 FBXO9Q9UK97 447 aaPredicted RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 STRIP2Q9ULQ0 834 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 GPC6Q9Y625 555 aaPredicted RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 MAP3K15Q6ZN16 1313 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 KRT37O76014 449 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 HOXB7P09629 217 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 FAM58BPP0C7Q3 252 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 MXI1P50539 228 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 LRRC63Q05C16 580 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 PARP6Q2NL67 630 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 TATDN2Q93075 761 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 LRRC59Q96AG4 307 aaKnown RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 MAGED4Q96JG8 741 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 OSBPL10Q9BXB5 764 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 HMG20AQ9NP66 347 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 HSD17B3P37058 310 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 ALDH5A1P51649 535 aaPredicted RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 TRIP10Q15642 601 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 NCCRP1Q6ZVX7 275 aaPredicted RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 OTUD6AQ7L8S5 288 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 SSH3Q8TE77 659 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 CDKL2Q92772 493 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 BORCS5Q969J3 196 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 KIFC2Q96AC6 838 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 SERPINB12Q96P63 405 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 PALM3A6NDB9 673 aaPredicted RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 GSNP06396 782 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 TMOD1P28289 359 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 GARSP41250 739 aaKnown RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 NLRP11P59045 1033 aaKnown RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 CEP78Q5JTW2 689 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 C16orf89Q6UX73 402 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.68□□□□□ -1.34
CLK3-212ENST00000563418 SIX5Q8N196 739 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 GOLPH3LQ9H4A5 285 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 PCDHGC5Q9Y5F6 944 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 H3BNX3 289 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 U2AF1L4Q8WU68 220 aaKnown RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 SPATA17Q96L03 361 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 AK8Q96MA6 479 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 SQORQ9Y6N5 450 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 PALMO75781 387 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 PEX5P50542 639 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 PPP6R3Q5H9R7 873 aaPredicted RBP6.68□□□□□ -1.34
CLK3-212ENST00000563418 CCDC103Q8IW40 242 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 SH3TC2Q8TF17 1288 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 BEGAINQ9BUH8 593 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 PRDM16Q9HAZ2 1276 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 CEP72Q9P209 647 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 CROTQ9UKG9 612 aa6.68□□□□□ -1.34
CLK3-212ENST00000563418 KDM3AQ9Y4C1 1321 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms