RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 SSU72P8A0A1W2PR75 194 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 ESYT3A0FGR9 886 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 MAGEA1P43355 309 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 ATP2C1P98194 919 aaPredicted RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 LAMB3Q13751 1172 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 UAP1Q16222 522 aaPredicted RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 RTN1Q16799 776 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 FKBP15Q5T1M5 1219 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 FKBP1CQ5VVH2 108 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 TBC1D1Q86TI0 1168 aaPredicted RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 CDAN1Q8IWY9 1227 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 TRIM47Q96LD4 638 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 KRT12Q99456 494 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 OSBPL1AQ9BXW6 950 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 TMEM39BQ9GZU3 492 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 TCP11L1Q9NUJ3 509 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 CHCHD3Q9NX63 227 aaKnown RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 GPRC5DQ9NZD1 345 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 CNOT8Q9UFF9 292 aaKnown RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 SCAF8Q9UPN6 1271 aaKnown RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 BICDL2A1A5D9 508 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 AKR1B10O60218 316 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 DDNO94850 711 aaPredicted RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 GUCY1A2P33402 732 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 CTCFP49711 727 aaPredicted RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 MAGOHP61326 146 aaKnown RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 ATP11AP98196 1134 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 APBB1IPQ7Z5R6 666 aaPredicted RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 CATIPQ7Z7H3 387 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 HOOK3Q86VS8 718 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 LMNTD2Q8IXW0 634 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 TRPM4Q8TD43 1214 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 MAGOHBQ96A72 148 aaKnown RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 BICD1Q96G01 975 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 INPP4AQ96PE3 977 aaPredicted RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 EDEM3Q9BZQ6 932 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 SMARCAL1Q9NZC9 954 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 ARHGAP20Q9P2F6 1191 aa11.84□□□□□ -0.51
USP3-206ENST00000558157 NOVA2Q9UNW9 492 aaKnown RBP11.84□□□□□ -0.51
USP3-206ENST00000558157 ZSCAN5CA6NGD5 496 aaPredicted RBP11.83□□□□□ -0.52
USP3-206ENST00000558157 RBAK-RBAKDNI3L0D1 243 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 RAD51CO43502 376 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 CTNND1O60716 968 aaKnown RBP11.83□□□□□ -0.52
USP3-206ENST00000558157 SMIM24O75264 130 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 ECHS1P30084 290 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 KRT2P35908 639 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 LACTBP83111 547 aaPredicted RBP11.83□□□□□ -0.52
USP3-206ENST00000558157 HLTFQ14527 1009 aaKnown RBP eCLIP11.83□□□□□ -0.52
USP3-206ENST00000558157 TTI2Q6NXR4 508 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 KRT26Q7Z3Y9 468 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 CROCCP2Q86T23 111 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 FAM83AQ86UY5 434 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 USP38Q8NB14 1042 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 EZH1Q92800 747 aaPredicted RBP11.83□□□□□ -0.52
USP3-206ENST00000558157 NAF1Q96HR8 494 aaKnown RBP11.83□□□□□ -0.52
USP3-206ENST00000558157 RNF26Q9BY78 433 aaPredicted RBP11.83□□□□□ -0.52
USP3-206ENST00000558157 BLZF1Q9H2G9 400 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 EHD2Q9NZN4 543 aa11.83□□□□□ -0.52
USP3-206ENST00000558157 COQ9O75208 318 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 DDAH1O94760 285 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 SETSIPP0DME0 302 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 EPS15P42566 896 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 SNX1Q13596 522 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 SHROOM1Q2M3G4 852 aaPredicted RBP11.82□□□□□ -0.52
USP3-206ENST00000558157 CCDC178Q5BJE1 867 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 DGKHQ86XP1 1220 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 CLEC10AQ8IUN9 316 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 CEP95Q96GE4 821 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 RAB17Q9H0T7 212 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 HACL1Q9UJ83 578 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 STX8Q9UNK0 236 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 LRRC42Q9Y546 428 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 ASB3Q9Y575 518 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 COBLO75128 1261 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 GNAT1P11488 350 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 EIF4A3P38919 411 aaKnown RBP11.82□□□□□ -0.52
USP3-206ENST00000558157 TRAPPC10P48553 1259 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 PSMD2Q13200 908 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 DYNC1I2Q13409 638 aaKnown RBP11.82□□□□□ -0.52
USP3-206ENST00000558157 TYW1BQ6NUM6 668 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 CCDC84Q86UT8 332 aaPredicted RBP11.82□□□□□ -0.52
USP3-206ENST00000558157 ANKS1AQ92625 1134 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 MS4A14Q96JA4 679 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 PCMTD1Q96MG8 357 aaPredicted RBP11.82□□□□□ -0.52
USP3-206ENST00000558157 PSMB7Q99436 277 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 MTRQ99707 1265 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 GDAQ9Y2T3 454 aa11.82□□□□□ -0.52
USP3-206ENST00000558157 IGKV6D-41A0A0C4DH26 115 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 SPDYE3A6NKU9 549 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 NCK2O43639 380 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 SKIV2L2P42285 1042 aaKnown RBP11.81□□□□□ -0.52
USP3-206ENST00000558157 ABL2P42684 1182 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 TNNI2P48788 182 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 ALDH5A1P51649 535 aaPredicted RBP11.81□□□□□ -0.52
USP3-206ENST00000558157 NCALDP61601 193 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 TROAPQ12815 778 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 TAF11Q15544 211 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 GALNTL6Q49A17 601 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 SPATA21Q7Z572 469 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 FANCBQ8NB91 859 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms