RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	PLCB4	Q15147	1175 aa		5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	PPP2R5E	Q16537	467 aa		5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	LRRC23	Q53EV4	343 aa	Predicted RBP	5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	CCDC137	Q6PK04	289 aa	Known RBP	5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	POTEG	Q6S5H5	508 aa		5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	POTEE	Q6S8J3	1075 aa		5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	ZNF354C	Q86Y25	554 aa		5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	PASD1	Q8IV76	773 aa		5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	SRRM1	Q8IYB3	904 aa	Known RBP	5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	CFAP57	Q96MR6	1250 aa		5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	CENPK	Q9BS16	269 aa		5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	ISCU	Q9H1K1	167 aa		5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	ZWILCH	Q9H900	591 aa		5.37	□□□□□ -1.55
SYNE2-223	ENST00000557005	RASA4B	C9J798	803 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005		F5H423	210 aa	Predicted RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	STXBP3	O00186	592 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	OPLAH	O14841	1288 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	RASA4	O43374	803 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	TOM1L1	O75674	476 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	GDF11	O95390	407 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	MYBL2	P10244	700 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	GTF2I	P78347	998 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ODR4	Q5SWX8	454 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	LRRC43	Q8N309	656 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	BBOF1	Q8ND07	529 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SMYD3	Q9H7B4	428 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	IFT122	Q9HBG6	1241 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	GINM1	Q9NU53	330 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ANKFY1	Q9P2R3	1169 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	CCT8L1P	A6NM43	557 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	CASQ2	O14958	399 aa	Predicted RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	PHF2	O75151	1096 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	TRPA1	O75762	1119 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	DCTN3	O75935	186 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	RHOBTB3	O94955	611 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	GLI1	P08151	1106 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	MYBL1	P10243	752 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	RWDD2B	P57060	319 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SEPT2	Q15019	361 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	CDKAL1	Q5VV42	579 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	KIAA0825	Q8IV33	1275 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	OGFOD1	Q8N543	542 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	PIP4K2C	Q8TBX8	421 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	MYCBPAP	Q8TBZ2	947 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	HSPH1	Q92598	858 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	C7orf25	Q9BPX7	421 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	TMEM47	Q9BQJ4	181 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ZNF577	Q9BSK1	485 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	TCHP	Q9BT92	498 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	MAD2L2	Q9UI95	211 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	DCTN4	Q9UJW0	460 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SLC4A7	Q9Y6M7	1214 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	NWD1	Q149M9	1564 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	MYMK	A6NI61	221 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	TTLL1	O95922	423 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	FAM107A	O95990	144 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	POLR2M	P0CAP2	368 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	UBTFL6	P0CB48	400 aa	Predicted RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	TARS	P26639	723 aa	Known RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	IRX4	P78413	519 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	MAP7	Q14244	749 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ALX1	Q15699	326 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ASPRV1	Q53RT3	343 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SH2D4B	Q5SQS7	431 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	MFSD14B	Q5SR56	506 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SYCP2L	Q5T4T6	812 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	FBXO11	Q86XK2	927 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SPICE1	Q8N0Z3	855 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	DEPDC1B	Q8WUY9	529 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	BTBD6	Q96KE9	485 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	NUDCD1	Q96RS6	583 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	FERMT1	Q9BQL6	677 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	GDF3	Q9NR23	364 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	PNMA6F	A0A0J9YX94	578 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	LMNA	P02545	664 aa	Known RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	GAP43	P17677	238 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SOX5	P35711	763 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SARS	P49591	514 aa	Known RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	STK4	Q13043	487 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SEPT6	Q14141	434 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	DRAP1	Q14919	205 aa	Predicted RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	TRAPPC3L	Q5T215	181 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SCYL2	Q6P3W7	929 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	TRPM8	Q7Z2W7	1104 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ANKMY2	Q8IV38	441 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ANKRD35	Q8N283	1001 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	TEX9	Q8N6V9	391 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	HIPK4	Q8NE63	616 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ZNF564	Q8TBZ8	553 aa	Predicted RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	PPP4R1	Q8TF05	950 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ZBTB10	Q96DT7	871 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ACCS	Q96QU6	501 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	DDX23	Q9BUQ8	820 aa	Known RBP	5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	SEMA6B	Q9H3T3	888 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	ETNK1	Q9HBU6	452 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	RASSF10	A6NK89	507 aa		5.36	□□□□□ -1.55
SYNE2-223	ENST00000557005	CCDC188	H7C350	402 aa		5.36	□□□□□ -1.55

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