RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 POU5F2Q8N7G0 328 aa7.68□□□□□ -1.18
LINC00643-204ENST00000555934 WDR48Q8TAF3 677 aa7.68□□□□□ -1.18
LINC00643-204ENST00000555934 FAXDC2Q96IV6 333 aa7.68□□□□□ -1.18
LINC00643-204ENST00000555934 FAM84AQ96KN4 292 aa7.68□□□□□ -1.18
LINC00643-204ENST00000555934 TMEM209Q96SK2 561 aa7.68□□□□□ -1.18
LINC00643-204ENST00000555934 CCM2LQ9NUG4 571 aaPredicted RBP7.68□□□□□ -1.18
LINC00643-204ENST00000555934 USP36Q9P275 1121 aaKnown RBP7.68□□□□□ -1.18
LINC00643-204ENST00000555934 MAGEL2Q9UJ55 1249 aa7.68□□□□□ -1.18
LINC00643-204ENST00000555934 ETV2O00321 342 aaPredicted RBP7.67□□□□□ -1.18
LINC00643-204ENST00000555934 XPOTO43592 962 aaKnown RBP7.67□□□□□ -1.18
LINC00643-204ENST00000555934 PCDH8O95206 1070 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 SRSF2Q01130 221 aaKnown RBP7.67□□□□□ -1.18
LINC00643-204ENST00000555934 ACAP2Q15057 778 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 LRRC41Q15345 812 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 UGT8Q16880 541 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 FMNL3Q8IVF7 1028 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 AMOTL1Q8IY63 956 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 CALML6Q8TD86 181 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 CHMP4CQ96CF2 233 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 CLIC6Q96NY7 704 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 C11orf84Q9BUA3 381 aaPredicted RBP7.67□□□□□ -1.18
LINC00643-204ENST00000555934 PRDM12Q9H4Q4 367 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 DNAJC28Q9NX36 388 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 TCEAL9Q9UHQ7 104 aa7.67□□□□□ -1.18
LINC00643-204ENST00000555934 ST20-MTHFSA0A0A6YYL1 179 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 PLA2G1BP04054 148 aaKnown RBP7.66□□□□□ -1.18
LINC00643-204ENST00000555934 OSMP13725 252 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 ADCY8P40145 1251 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 EPHB1P54762 984 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 IL13RA1P78552 427 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 RGL3Q3MIN7 710 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 PITRM1Q5JRX3 1037 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 ZNF648Q5T619 568 aaPredicted RBP7.66□□□□□ -1.18
LINC00643-204ENST00000555934 KIAA1841Q6NSI8 718 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 TTLL7Q6ZT98 887 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 ACAP3Q96P50 834 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 USP18Q9UMW8 372 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 LUC7L2Q9Y383 392 aaKnown RBP7.66□□□□□ -1.18
LINC00643-204ENST00000555934 PMF1-BGLAPU3KQ54 211 aa7.66□□□□□ -1.18
LINC00643-204ENST00000555934 FZD9O00144 591 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 AKAP10O43572 662 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 ENPP1P22413 925 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 CD83Q01151 205 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 SSPNQ14714 243 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 FSCN1Q16658 493 aaKnown RBP7.65□□□□□ -1.18
LINC00643-204ENST00000555934 TMEFF1Q8IYR6 380 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 KYQ8NBH2 561 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 TSR2Q969E8 191 aaKnown RBP7.65□□□□□ -1.18
LINC00643-204ENST00000555934 OR10A5Q9H207 317 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 ZIM2Q9NZV7 527 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 CHPF2Q9P2E5 772 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 IP6K2Q9UHH9 426 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 IRAK3Q9Y616 596 aa7.65□□□□□ -1.18
LINC00643-204ENST00000555934 PCDHGA12O60330 932 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 SNUPNO95149 360 aaKnown RBP7.64□□□□□ -1.19
LINC00643-204ENST00000555934 CFBP00751 764 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 PI3P19957 117 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 APEX1P27695 318 aaKnown RBP7.64□□□□□ -1.19
LINC00643-204ENST00000555934 LGALS4P56470 323 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 CCT2P78371 535 aaKnown RBP7.64□□□□□ -1.19
LINC00643-204ENST00000555934 MOGSQ13724 837 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 ODF1Q14990 250 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.64□□□□□ -1.19
LINC00643-204ENST00000555934 WDR72Q3MJ13 1102 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 RPGRQ92834 1020 aaKnown RBP7.64□□□□□ -1.19
LINC00643-204ENST00000555934 SIGLEC10Q96LC7 697 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 SLC2A13Q96QE2 648 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 BTBD2Q9BX70 525 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 MTG2Q9H4K7 406 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 SPEF1Q9Y4P9 236 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 PCDHGA9Q9Y5G4 932 aaKnown RBP7.64□□□□□ -1.19
LINC00643-204ENST00000555934 PCDHGA8Q9Y5G5 932 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 PCDHGA7Q9Y5G6 932 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 PCDHGA6Q9Y5G7 932 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 PCDHGA3Q9Y5H0 932 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 PCDHGA2Q9Y5H1 932 aa7.64□□□□□ -1.19
LINC00643-204ENST00000555934 MYPNQ86TC9 1320 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 RBP3P10745 1247 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 PIN1Q13526 163 aaPredicted RBP7.63□□□□□ -1.19
LINC00643-204ENST00000555934 TRIM25Q14258 630 aaKnown RBP7.63□□□□□ -1.19
LINC00643-204ENST00000555934 PPP2R5AQ15172 486 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 ATG14Q6ZNE5 492 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 KANSL1Q7Z3B3 1105 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 PPP1R16BQ96T49 567 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 SLC38A3Q99624 504 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 KRTAP4-9Q9BYQ8 210 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 KCTD10Q9H3F6 313 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 PCDH18Q9HCL0 1135 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 KCND1Q9NSA2 647 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 DPP7Q9UHL4 492 aa7.63□□□□□ -1.19
LINC00643-204ENST00000555934 NOB1Q9ULX3 412 aaKnown RBP7.63□□□□□ -1.19
LINC00643-204ENST00000555934 SCGB1D2O95969 90 aa7.62□□□□□ -1.19
LINC00643-204ENST00000555934 MED14OSP0DP75 135 aa7.62□□□□□ -1.19
LINC00643-204ENST00000555934 GLDCP23378 1020 aa7.62□□□□□ -1.19
LINC00643-204ENST00000555934 MLLT6P55198 1093 aaPredicted RBP7.62□□□□□ -1.19
LINC00643-204ENST00000555934 CDK17Q00537 523 aa7.62□□□□□ -1.19
LINC00643-204ENST00000555934 PPARAQ07869 468 aa7.62□□□□□ -1.19
LINC00643-204ENST00000555934 KANK2Q63ZY3 851 aa7.62□□□□□ -1.19
LINC00643-204ENST00000555934 CNKSR3Q6P9H4 555 aa7.62□□□□□ -1.19
LINC00643-204ENST00000555934 TRMT10BQ6PF06 316 aaKnown RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms