RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 CCDC136Q96JN2 1154 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 TYW1Q9NV66 732 aaKnown RBP12.99□□□□□ -0.33
NEK3-204ENST00000552973 CD207Q9UJ71 328 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 AKT3Q9Y243 479 aa12.99□□□□□ -0.33
NEK3-204ENST00000552973 C19orf67A6NJJ6 358 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 C9IYK1 514 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 MSH4O15457 936 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 DCXO43602 365 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 PSMA5P28066 241 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 NLRP11P59045 1033 aaKnown RBP12.98□□□□□ -0.33
NEK3-204ENST00000552973 RBM10P98175 930 aaKnown RBP12.98□□□□□ -0.33
NEK3-204ENST00000552973 SMAD2Q15796 467 aaKnown RBP12.98□□□□□ -0.33
NEK3-204ENST00000552973 ODR4Q5SWX8 454 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 MCTP2Q6DN12 878 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 BICD2Q8TD16 824 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 RNF26Q9BY78 433 aaPredicted RBP12.98□□□□□ -0.33
NEK3-204ENST00000552973 AGXT2Q9BYV1 514 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 ATP6V0A4Q9HBG4 840 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 DISC1Q9NRI5 854 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 C1orf112Q9NSG2 853 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 CLEC1BQ9P126 229 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 PRKAG3Q9UGI9 489 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 CEP131Q9UPN4 1083 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 PCDHB12Q9Y5F1 795 aa12.98□□□□□ -0.33
NEK3-204ENST00000552973 PRR33A8MZF0 331 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 WDR64B1ANS9 1081 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 ZNF862O60290 1169 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 OATP04181 439 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 IFNAR1P17181 557 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 FGFR4P22455 802 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 SMAD4Q13485 552 aaKnown RBP12.97□□□□□ -0.33
NEK3-204ENST00000552973 UGCGQ16739 394 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 CSPP1Q1MSJ5 1256 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 THNSL1Q8IYQ7 743 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 CCDC148Q8NFR7 591 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 TBCKQ8TEA7 893 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 PPP2R3CQ969Q6 453 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 UNC45AQ9H3U1 944 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 TLE6Q9H808 572 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 AAASQ9NRG9 546 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 NRBP2Q9NSY0 501 aa12.97□□□□□ -0.33
NEK3-204ENST00000552973 BARX2Q9UMQ3 279 aaPredicted RBP12.97□□□□□ -0.33
NEK3-204ENST00000552973 TRANK1O15050 2925 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 MAGEB2O15479 319 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 GAS7O60861 476 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 FGF18O76093 207 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 ERVFC1P60507 584 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 FAM189BP81408 668 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 PRKCEQ02156 737 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 STK3Q13188 491 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 TOB2Q14106 344 aaPredicted RBP12.96□□□□□ -0.33
NEK3-204ENST00000552973 DSC3Q14574 896 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 RUFY3Q7L099 469 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 FBXL16Q8N461 479 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 EFHBQ8N7U6 833 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 COLGALT1Q8NBJ5 622 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 RNF169Q8NCN4 708 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 MSLNLQ96KJ4 702 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 MAP7D2Q96T17 732 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 SH2D3AQ9BRG2 576 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 TEKT3Q9BXF9 490 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 ADAMTS10Q9H324 1103 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 CWH43Q9H720 699 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 TMEM161AQ9NX61 479 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 MUTYHQ9UIF7 546 aa12.96□□□□□ -0.33
NEK3-204ENST00000552973 NID2Q14112 1375 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 TTC3P53804 2025 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 KAT6AQ92794 2004 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 TMEM150BA6NC51 233 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 DTNBO60941 627 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 CSDE1O75534 798 aaKnown RBP12.95□□□□□ -0.34
NEK3-204ENST00000552973 REC8O95072 547 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 TDP2O95551 362 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 GLP2RO95838 553 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 ZSCAN20P17040 1043 aaPredicted RBP12.95□□□□□ -0.34
NEK3-204ENST00000552973 EIF4BP23588 611 aaKnown RBP12.95□□□□□ -0.34
NEK3-204ENST00000552973 TMOD1P28289 359 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 PBX3P40426 434 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 USP11P51784 963 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 SSRP1Q08945 709 aaKnown RBP12.95□□□□□ -0.34
NEK3-204ENST00000552973 DRP2Q13474 957 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 LRCH2Q5VUJ6 765 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 LRRC55Q6ZSA7 311 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 RNF135Q8IUD6 432 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 LINC01465Q8N7H1 131 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 SLC5A5Q92911 643 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 FAM167AQ96KS9 214 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 SCLT1Q96NL6 688 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 AIFM3Q96NN9 605 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 CASD1Q96PB1 797 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 UPF3BQ9BZI7 483 aaKnown RBP12.95□□□□□ -0.34
NEK3-204ENST00000552973 ZSWIM6Q9HCJ5 1215 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 TLR9Q9NR96 1032 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 RNF19AQ9NV58 838 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 RNF216Q9NWF9 866 aaPredicted RBP12.95□□□□□ -0.34
NEK3-204ENST00000552973 PCDHA4Q9UN74 947 aa12.95□□□□□ -0.34
NEK3-204ENST00000552973 CPLX1O14810 134 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 GPC3P51654 580 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 EVCP57679 992 aa12.94□□□□□ -0.34
NEK3-204ENST00000552973 UBE3AQ05086 875 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms