RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 NFRKBQ6P4R8 1299 aa13.71□□□□□ -0.22
PTCH1-212ENST00000546744 RSRC2Q7L4I2 434 aaKnown RBP13.71□□□□□ -0.22
PTCH1-212ENST00000546744 GIPC2Q8TF65 315 aa13.71□□□□□ -0.22
PTCH1-212ENST00000546744 RFFLQ8WZ73 363 aa13.71□□□□□ -0.22
PTCH1-212ENST00000546744 SEPT3Q9UH03 358 aa13.71□□□□□ -0.22
PTCH1-212ENST00000546744 SNX5Q9Y5X3 404 aa13.71□□□□□ -0.22
PTCH1-212ENST00000546744 TMCC1O94876 653 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 PICALMQ13492 652 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 RAB44Q7Z6P3 723 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-212ENST00000546744 REXO1L1PQ8IX06 675 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 FUCA2Q9BTY2 467 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 MAD1L1Q9Y6D9 718 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 LRRIQ3A6PVS8 624 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-212ENST00000546744 SMAPO00193 183 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 FSBPO95073 299 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 PAPOLAP51003 745 aaKnown RBP13.7□□□□□ -0.22
PTCH1-212ENST00000546744 KCNV2Q8TDN2 545 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 ZNF594Q96JF6 807 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-212ENST00000546744 SCYL1Q96KG9 808 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 MRPL46Q9H2W6 279 aaKnown RBP13.7□□□□□ -0.22
PTCH1-212ENST00000546744 H7C0C1 242 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 PGM1P36871 562 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 ATP5OP48047 213 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 GPC5P78333 572 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 HIC1Q14526 733 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 FAM83BQ5T0W9 1011 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 FAM47EQ6ZV65 393 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 SMCR8Q8TEV9 937 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-212ENST00000546744 THAP11Q96EK4 314 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 KCNK16Q96T55 309 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 WDR11Q9BZH6 1224 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 PAPOLBQ9NRJ5 636 aaKnown RBP13.7□□□□□ -0.22
PTCH1-212ENST00000546744 TLK1Q9UKI8 766 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 CDHR2Q9BYE9 1310 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 NALCNQ8IZF0 1738 aa13.7□□□□□ -0.22
PTCH1-212ENST00000546744 LRRC53A6NM62 1247 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 COPS2P61201 443 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 NR5A1Q13285 461 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 MAPRE2Q15555 327 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 ATP11CQ8NB49 1132 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 C8orf37Q96NL8 207 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 CCDC134Q9H6E4 229 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 BIN2Q9UBW5 565 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-212ENST00000546744 TRPC5Q9UL62 973 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-212ENST00000546744 NDUFB9Q9Y6M9 179 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 KRT4P19013 534 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 PLCG1P19174 1290 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 CTCFP49711 727 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-212ENST00000546744 TRIM50Q86XT4 487 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 ZBTB38Q8NAP3 1195 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-212ENST00000546744 SNF8Q96H20 258 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 RANBP17Q9H2T7 1088 aaKnown RBP13.69□□□□□ -0.22
PTCH1-212ENST00000546744 K7ENM7 598 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 SRGAP2BP0DMP2 458 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 CAPN12Q6ZSI9 719 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 ACAD11Q709F0 780 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 COL23A1Q86Y22 540 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-212ENST00000546744 GJA10Q969M2 543 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 DCLRE1BQ9H816 532 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 ZNF711Q9Y462 761 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 WDR46O15213 610 aaKnown RBP13.69□□□□□ -0.22
PTCH1-212ENST00000546744 TEX33O43247 280 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 SLC26A4O43511 780 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 CHMP2AO43633 222 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 STRNO43815 780 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 SH3BP5O60239 455 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 KDM1AO60341 852 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 PDE8BO95263 885 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 SRGNP10124 158 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 AARSP49588 968 aaKnown RBP eCLIP13.69□□□□□ -0.22
PTCH1-212ENST00000546744 CTSWP56202 376 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 BTNL9Q6UXG8 535 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 DPH6Q7L8W6 267 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 GSPT2Q8IYD1 628 aaKnown RBP13.69□□□□□ -0.22
PTCH1-212ENST00000546744 CMTM5Q96DZ9 223 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 ZIM3Q96PE6 472 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 SPC25Q9HBM1 224 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 ANKFY1Q9P2R3 1169 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 ANGPTL3Q9Y5C1 460 aa13.69□□□□□ -0.22
PTCH1-212ENST00000546744 ZRANB2O95218 330 aaKnown RBP eCLIP13.68□□□□□ -0.22
PTCH1-212ENST00000546744 LAMB3Q13751 1172 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 ALX1Q15699 326 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 DDB1Q16531 1140 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 SGMS1Q86VZ5 419 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 TPH2Q8IWU9 490 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 ZNF496Q96IT1 587 aaPredicted RBP13.68□□□□□ -0.22
PTCH1-212ENST00000546744 ACCSQ96QU6 501 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 MTRQ99707 1265 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 CCDC87Q9NVE4 849 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 hCG_1642624A0A1W2PR95 340 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 HDLBPQ00341 1268 aaKnown RBP13.68□□□□□ -0.22
PTCH1-212ENST00000546744 CHURC1Q8WUH1 139 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 FAM192AQ9GZU8 254 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 KIAA1024Q9UPX6 916 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 ERVV-2B6SEH9 535 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 TOM1L1O75674 476 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 MXI1P50539 228 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 KIAA1755Q5JYT7 1200 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 PDXDC1Q6P996 788 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 CAVIN3Q969G5 261 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms