RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PTPN21Q16825 1174 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 CFAP100Q494V2 611 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 MDH1BQ5I0G3 518 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 RASIP1Q5U651 963 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 GALNT13Q8IUC8 556 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 CLVS1Q8IUQ0 354 aaPredicted RBP9.58□□□□□ -0.88
VPS13D-212ENST00000543766 PI4K2BQ8TCG2 481 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 RNF25Q96BH1 459 aaPredicted RBP9.58□□□□□ -0.88
VPS13D-212ENST00000543766 CNDP2Q96KP4 475 aaKnown RBP9.58□□□□□ -0.88
VPS13D-212ENST00000543766 KRT23Q9C075 422 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 PIDD1Q9HB75 910 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 PCMTD2Q9NV79 361 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 POLR3EQ9NVU0 708 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 FBXO10Q9UK96 956 aa9.58□□□□□ -0.88
VPS13D-212ENST00000543766 ADGRL3Q9HAR2 1447 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 VWA3AA6NCI4 1184 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 H3BQF6 201 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 HSPA6P17066 643 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 CCT6AP40227 531 aaKnown RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 CTAG1AP78358 180 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 GPATCH4Q5T3I0 446 aaKnown RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 RAPH1Q70E73 1250 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 BEND5Q7L4P6 421 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 FATE1Q969F0 183 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 OSBP2Q969R2 916 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 DDX50Q9BQ39 737 aaKnown RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 PALD1Q9ULE6 856 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 CORO1CQ9ULV4 474 aaPredicted RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 MYPNQ86TC9 1320 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 TMEM238LA0A1B0GVL6 79 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 CETN3O15182 167 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 FANCGO15287 622 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 F13A1P00488 732 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 MYCLP12524 364 aaPredicted RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 PCP4P48539 62 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 RPP30P78346 268 aaKnown RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 MRPS15P82914 257 aaKnown RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 ZNF554Q86TJ5 538 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 ENAMQ9NRM1 1142 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 TBC1D22BQ9NU19 505 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 SH3BGRL2Q9UJC5 107 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 NOSIPQ9Y314 301 aaKnown RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 XRN1Q8IZH2 1706 aaKnown RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 SALL3Q9BXA9 1300 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 CPS1P31327 1500 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 ARHGAP10A1A4S6 786 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 PSDA5PKW4 1024 aaPredicted RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 MOGSQ13724 837 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 ARID5BQ14865 1188 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 PPP4R3AQ6IN85 833 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 TOGARAM2Q6ZUX3 1019 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 ANO5Q75V66 913 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 B4GALNT4Q76KP1 1039 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 CAND1Q86VP6 1230 aaKnown RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 MRPL50Q8N5N7 158 aaKnown RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 HOOK2Q96ED9 719 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 GIMAP5Q96F15 307 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 FGD4Q96M96 766 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 CCDC77Q9BR77 488 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 GPATCH1Q9BRR8 931 aaKnown RBP9.57□□□□□ -0.88
VPS13D-212ENST00000543766 EHD2Q9NZN4 543 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 TELO2Q9Y4R8 837 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 CD163L1Q9NR16 1453 aa9.57□□□□□ -0.88
VPS13D-212ENST00000543766 CCDC163A0A0D9SF12 145 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 CCNT1O60563 726 aaKnown RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 GUCY1B2O75343 617 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 POLR3DP05423 398 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 IFNA8P32881 189 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 CASP2P42575 452 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 SLCO1A2P46721 670 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 NOP14P78316 857 aaKnown RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 VAC14Q08AM6 782 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 TRPC3Q13507 836 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 CLVS2Q5SYC1 327 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 NUTM2DQ5VT03 806 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 E4F1Q66K89 784 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 C16orf71Q8IYS4 520 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 ST13P4Q8IZP2 240 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 SH3GL2Q99962 352 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 KIAA1683Q9H0B3 1180 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 CYLDQ9NQC7 956 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 STK32BQ9NY57 414 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 CYTH4Q9UIA0 394 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 PTBP2Q9UKA9 531 aaKnown RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 FBXL21Q9UKT6 434 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 TTC21AQ8NDW8 1320 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 APOL1O14791 398 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 TP73O15350 636 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 SRGAP3O43295 1099 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 PPP1R37O75864 691 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 GLAP06280 429 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 ATP5BP06576 529 aaKnown RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 PLCG2P16885 1265 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 SULT1E1P49888 294 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 COPB1P53618 953 aaKnown RBP9.56□□□□□ -0.88
VPS13D-212ENST00000543766 CUL1Q13616 776 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 IDI1Q13907 227 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 NR1D2Q14995 579 aa9.56□□□□□ -0.88
VPS13D-212ENST00000543766 DALRD3Q5D0E6 543 aaKnown RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms