RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 PCDHA8Q9Y5H6 950 aa13.5□□□□□ -0.25
COPA-205ENST00000541366 MED19A0JLT2 244 aaPredicted RBP13.49□□□□□ -0.25
COPA-205ENST00000541366 HIP1O00291 1037 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 CLASP2O75122 1294 aaKnown RBP13.49□□□□□ -0.25
COPA-205ENST00000541366 CA8P35219 290 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 FAM189BP81408 668 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 ITGB3BPQ13352 177 aaPredicted RBP13.49□□□□□ -0.25
COPA-205ENST00000541366 DSC3Q14574 896 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 TPRNQ4KMQ1 711 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 MCTP2Q6DN12 878 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 CES5AQ6NT32 575 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 PLPPR4Q7Z2D5 763 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 SRBD1Q8N5C6 995 aaKnown RBP13.49□□□□□ -0.25
COPA-205ENST00000541366 IGDCC4Q8TDY8 1250 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 AUTS2Q8WXX7 1259 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 PGBD1Q96JS3 809 aa13.49□□□□□ -0.25
COPA-205ENST00000541366 SEC63Q9UGP8 760 aaKnown RBP13.49□□□□□ -0.25
COPA-205ENST00000541366 C2orf71A6NGG8 1288 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 NT5C1B-RDH14C9J2C7 533 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 E7EWF7 191 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 DDX39AO00148 427 aaKnown RBP13.48□□□□□ -0.25
COPA-205ENST00000541366 VTNP04004 478 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 NPR3P17342 541 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 RXRAP19793 462 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 ITIH3Q06033 890 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 COL9A3Q14050 684 aaPredicted RBP13.48□□□□□ -0.25
COPA-205ENST00000541366 RALYLQ86SE5 291 aaKnown RBP13.48□□□□□ -0.25
COPA-205ENST00000541366 CHD1LQ86WJ1 897 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 RAB11FIP4Q86YS3 637 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 SMC5Q8IY18 1101 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 ZNF654Q8IZM8 581 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 MRPL43Q8N983 215 aaKnown RBP13.48□□□□□ -0.25
COPA-205ENST00000541366 TDRD5Q8NAT2 981 aaKnown RBP13.48□□□□□ -0.25
COPA-205ENST00000541366 ZNF558Q96NG5 402 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 NECTIN4Q96NY8 510 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 MXRA8Q9BRK3 442 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 TMEM117Q9H0C3 514 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 SPG21Q9NZD8 308 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 CEP250Q9BV73 2442 aa13.48□□□□□ -0.25
COPA-205ENST00000541366 SPDYE3A6NKU9 549 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 ZBTB42B2RXF5 422 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 GPR182O15218 404 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 MAFGO15525 162 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 CCNE2O96020 404 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 EPCAMP16422 314 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 MTHFRP42898 656 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 CLCN5P51795 746 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 SMC1AQ14683 1233 aaKnown RBP13.47□□□□□ -0.25
COPA-205ENST00000541366 ANGPT1Q15389 498 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 CLLU1OSQ5K130 101 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 TRMT1LQ7Z2T5 733 aaKnown RBP13.47□□□□□ -0.25
COPA-205ENST00000541366 CCDC60Q8IWA6 550 aaPredicted RBP13.47□□□□□ -0.25
COPA-205ENST00000541366 ZDHHC14Q8IZN3 488 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 CCDC82Q8N4S0 544 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 RNF169Q8NCN4 708 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 CTCFLQ8NI51 663 aaPredicted RBP13.47□□□□□ -0.25
COPA-205ENST00000541366 RMDN1Q96DB5 314 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 ZNF668Q96K58 619 aaPredicted RBP13.47□□□□□ -0.25
COPA-205ENST00000541366 LY9Q9HBG7 655 aa13.47□□□□□ -0.25
COPA-205ENST00000541366 TPRP12270 2363 aaKnown RBP13.47□□□□□ -0.25
COPA-205ENST00000541366 NFASCO94856 1347 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 BACH1O14867 736 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 HBP1O60381 514 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 GPR32O75388 356 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 ATG7O95352 703 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 CXCL14O95715 111 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 AOC1P19801 751 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 ATP4AP20648 1035 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 METAP2P50579 478 aaKnown RBP eCLIP13.46□□□□□ -0.25
COPA-205ENST00000541366 CRYBB1P53674 252 aaPredicted RBP13.46□□□□□ -0.25
COPA-205ENST00000541366 KRT17Q04695 432 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 SART3Q15020 963 aaKnown RBP13.46□□□□□ -0.25
COPA-205ENST00000541366 CCDC105Q8IYK2 499 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 SLC39A11Q8N1S5 342 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 LRRC43Q8N309 656 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 NCOA7Q8NI08 942 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 TNPO1Q92973 898 aaKnown RBP13.46□□□□□ -0.25
COPA-205ENST00000541366 SDF4Q9BRK5 362 aa13.46□□□□□ -0.25
COPA-205ENST00000541366 ELAC1Q9H777 363 aaKnown RBP13.46□□□□□ -0.25
COPA-205ENST00000541366 AGO4Q9HCK5 861 aaKnown RBP13.46□□□□□ -0.25
COPA-205ENST00000541366 DBR1Q9UK59 544 aaKnown RBP13.46□□□□□ -0.25
COPA-205ENST00000541366 SPTBN2O15020 2390 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 EPG5Q9HCE0 2579 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 IGKV6D-21A0A0A0MT36 114 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 C22orf31O95567 290 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 EOMESO95936 686 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 IGHDP01880 384 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 PPM1AP35813 382 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 NUCB1Q02818 461 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 KIAA1841Q6NSI8 718 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 ABHD15Q6UXT9 468 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 TMC5Q6UXY8 1006 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 TMEM173Q86WV6 379 aaPredicted RBP13.45□□□□□ -0.26
COPA-205ENST00000541366 ECHDC2Q86YB7 292 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 MB21D2Q8IYB1 491 aaPredicted RBP13.45□□□□□ -0.26
COPA-205ENST00000541366 METTL13Q8N6R0 699 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 HELQQ8TDG4 1101 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 R4GN57 208 aa13.45□□□□□ -0.26
COPA-205ENST00000541366 OTOGLQ3ZCN5 2332 aa13.44□□□□□ -0.26
COPA-205ENST00000541366 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms