RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 WRAP73Q9P2S5 460 aaPredicted RBP16.62■□□□□ 0.25
USP28-204ENST00000537642 COL4A6Q14031 1691 aa16.62■□□□□ 0.25
USP28-204ENST00000537642 NLRC5Q86WI3 1866 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 DDX11L8A8MPP1 907 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 LPXNO60711 386 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 RPS6KA5O75582 802 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 BAG4O95429 457 aaKnown RBP16.61■□□□□ 0.25
USP28-204ENST00000537642 P4HBP07237 508 aaKnown RBP16.61■□□□□ 0.25
USP28-204ENST00000537642 POU3F3P20264 500 aaPredicted RBP16.61■□□□□ 0.25
USP28-204ENST00000537642 TMOD1P28289 359 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 QARSP47897 775 aaKnown RBP16.61■□□□□ 0.25
USP28-204ENST00000537642 TBC1D8BQ0IIM8 1120 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 NFX1Q12986 1120 aaKnown RBP16.61■□□□□ 0.25
USP28-204ENST00000537642 GRB10Q13322 594 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 CALCRLQ16602 461 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 NCAPH2Q6IBW4 605 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 ANO5Q75V66 913 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.61■□□□□ 0.25
USP28-204ENST00000537642 FAM184AQ8NB25 1140 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 PPM1EQ8WY54 764 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 MAP7D2Q96T17 732 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 TSPYL2Q9H2G4 693 aaPredicted RBP16.61■□□□□ 0.25
USP28-204ENST00000537642 ADAMTS10Q9H324 1103 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 SUGCTQ9HAC7 445 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 MTUS1Q9ULD2 1270 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 ST3GAL5Q9UNP4 418 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 AKT3Q9Y243 479 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 MTCH2Q9Y6C9 303 aa16.61■□□□□ 0.25
USP28-204ENST00000537642 SPTBN5Q9NRC6 3674 aaKnown RBP16.61■□□□□ 0.25
USP28-204ENST00000537642 IGKV6-21A0A0C4DH24 114 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 MGEA5O60502 916 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 NEMFO60524 1076 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 NLRP11P59045 1033 aaKnown RBP16.6■□□□□ 0.25
USP28-204ENST00000537642 DRP2Q13474 957 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 CCDC85BQ15834 202 aaPredicted RBP16.6■□□□□ 0.25
USP28-204ENST00000537642 PLA2G4FQ68DD2 849 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 FAM228AQ86W67 206 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 CRIPAKQ8N1N5 446 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 GDPD5Q8WTR4 605 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 MTMR9Q96QG7 549 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 C17orf80Q9BSJ5 609 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 FOXP1Q9H334 677 aaPredicted RBP16.6■□□□□ 0.25
USP28-204ENST00000537642 RC3H2Q9HBD1 1191 aaKnown RBP16.6■□□□□ 0.25
USP28-204ENST00000537642 RGL1Q9NZL6 768 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 A0A0C4DFX4 3053 aa16.6■□□□□ 0.25
USP28-204ENST00000537642 DKC1O60832 514 aaKnown RBP eCLIP16.59■□□□□ 0.25
USP28-204ENST00000537642 ATP2B1P20020 1258 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 GPC3P51654 580 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 MICALL1Q8N3F8 863 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 IL27Q8NEV9 243 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 DYDC2Q96IM9 177 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 TMX3Q96JJ7 454 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 ZNF668Q96K58 619 aaPredicted RBP16.59■□□□□ 0.25
USP28-204ENST00000537642 LXNQ9BS40 222 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 TMEM60Q9H2L4 133 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 PRDM6Q9NQX0 595 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 PCDHA12Q9UN75 941 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 REV3LO60673 3130 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 RALGAPA2Q2PPJ7 1873 aa16.59■□□□□ 0.25
USP28-204ENST00000537642 GPR182O15218 404 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 GTPBP6O43824 516 aaPredicted RBP16.58■□□□□ 0.24
USP28-204ENST00000537642 MAFO75444 373 aaPredicted RBP16.58■□□□□ 0.24
USP28-204ENST00000537642 DGKIO75912 1065 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 MCM7P33993 719 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 TXKP42681 527 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 NPEPPSP55786 919 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 CYP4A11Q02928 519 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 CTTNQ14247 550 aaKnown RBP16.58■□□□□ 0.24
USP28-204ENST00000537642 ODR4Q5SWX8 454 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 NPAS4Q8IUM7 802 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 C4orf19Q8IY42 314 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 ZNF710Q8N1W2 664 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 ZNF579Q8NAF0 562 aaKnown RBP16.58■□□□□ 0.24
USP28-204ENST00000537642 ZNF689Q96CS4 500 aaPredicted RBP16.58■□□□□ 0.24
USP28-204ENST00000537642 TTC12Q9H892 705 aaPredicted RBP16.58■□□□□ 0.24
USP28-204ENST00000537642 CYP26B1Q9NR63 512 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 ARID2Q68CP9 1835 aa16.58■□□□□ 0.24
USP28-204ENST00000537642 ADGRA3Q8IWK6 1321 aa16.57■□□□□ 0.24
USP28-204ENST00000537642 SLITRK3O94933 977 aa16.57■□□□□ 0.24
USP28-204ENST00000537642 EIF4BP23588 611 aaKnown RBP16.57■□□□□ 0.24
USP28-204ENST00000537642 EPC2Q52LR7 807 aa16.57■□□□□ 0.24
USP28-204ENST00000537642 FAM43BQ6ZT52 329 aaPredicted RBP16.57■□□□□ 0.24
USP28-204ENST00000537642 NOSTRINQ8IVI9 506 aa16.57■□□□□ 0.24
USP28-204ENST00000537642 FIBCD1Q8N539 461 aa16.57■□□□□ 0.24
USP28-204ENST00000537642 FBXO22Q8NEZ5 403 aa16.57■□□□□ 0.24
USP28-204ENST00000537642 SAMD11Q96NU1 681 aa16.57■□□□□ 0.24
USP28-204ENST00000537642 ADAM2Q99965 735 aa16.57■□□□□ 0.24
USP28-204ENST00000537642 EIF2AK1Q9BQI3 630 aaKnown RBP16.57■□□□□ 0.24
USP28-204ENST00000537642 ZSWIM4Q9H7M6 989 aa16.57■□□□□ 0.24
USP28-204ENST00000537642 RGS18Q9NS28 235 aa16.57■□□□□ 0.24
USP28-204ENST00000537642 ZBTB39O15060 712 aa16.56■□□□□ 0.24
USP28-204ENST00000537642 LINC00271P0C7V0 271 aa16.56■□□□□ 0.24
USP28-204ENST00000537642 DARSP14868 501 aaKnown RBP16.56■□□□□ 0.24
USP28-204ENST00000537642 YWHABP31946 246 aaKnown RBP16.56■□□□□ 0.24
USP28-204ENST00000537642 SARSP49591 514 aaKnown RBP16.56■□□□□ 0.24
USP28-204ENST00000537642 DSC3Q14574 896 aa16.56■□□□□ 0.24
USP28-204ENST00000537642 ZNF174Q15697 407 aa16.56■□□□□ 0.24
USP28-204ENST00000537642 TPH2Q8IWU9 490 aa16.56■□□□□ 0.24
USP28-204ENST00000537642 TMEM192Q8IY95 271 aa16.56■□□□□ 0.24
USP28-204ENST00000537642 CEP170P1Q96L14 293 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms