RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ZMYND15Q9H091 742 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 BLZF1Q9H2G9 400 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 CXXC1Q9P0U4 656 aaPredicted RBP13.29□□□□□ -0.28
CLIP1-208ENST00000537004 DOCK5Q9H7D0 1870 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 DDX39AO00148 427 aaKnown RBP13.29□□□□□ -0.28
CLIP1-208ENST00000537004 OFD1O75665 1012 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 TDP2O95551 362 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 PTPN11Q06124 597 aaPredicted RBP13.29□□□□□ -0.28
CLIP1-208ENST00000537004 LRMPQ12912 555 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 CUL4BQ13620 913 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 CALCRLQ16602 461 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 NAALADL2Q58DX5 795 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 CT47A1Q5JQC4 288 aaPredicted RBP13.29□□□□□ -0.28
CLIP1-208ENST00000537004 ENOX1Q8TC92 643 aaKnown RBP13.29□□□□□ -0.28
CLIP1-208ENST00000537004 MTMR9Q96QG7 549 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 RNPEPQ9H4A4 650 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 IL23AQ9NPF7 189 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 PYCARDQ9ULZ3 195 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 IGLV3-22A0A075B6J6 115 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 GRXCR1A8MXD5 290 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 SLC37A4O43826 429 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 SMIM10L2AP0DMW4 78 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 SMIM10L2BP0DMW5 78 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 MARK3P27448 753 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 TECP42680 631 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 FILIP1Q7Z7B0 1213 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 C17orf53Q8N3J3 647 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-208ENST00000537004 KIAA1524Q8TCG1 905 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 CACTINQ8WUQ7 758 aaKnown RBP13.28□□□□□ -0.28
CLIP1-208ENST00000537004 FAM161BQ96MY7 647 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 AGO4Q9HCK5 861 aaKnown RBP13.28□□□□□ -0.28
CLIP1-208ENST00000537004 JPH1Q9HDC5 661 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-208ENST00000537004 SETD4Q9NVD3 440 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 NFE2L3Q9Y4A8 694 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 XIRP2A4UGR9 3374 aa13.28□□□□□ -0.28
CLIP1-208ENST00000537004 MAFGO15525 162 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 TREHO43280 583 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 SERPINC1P01008 464 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 IQCF3P0C7M6 154 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 CD44P16070 742 aaKnown RBP13.27□□□□□ -0.28
CLIP1-208ENST00000537004 TXKP42681 527 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 PPP4R3AQ6IN85 833 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.27□□□□□ -0.28
CLIP1-208ENST00000537004 CABP7Q86V35 215 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 IGSF22Q8N9C0 903 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 GIMAP8Q8ND71 665 aaPredicted RBP13.27□□□□□ -0.28
CLIP1-208ENST00000537004 SEPT1Q8WYJ6 367 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 MED15Q96RN5 788 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 PCYT2Q99447 389 aa13.27□□□□□ -0.28
CLIP1-208ENST00000537004 CBFA2T2O43439 604 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 CYP3A4P08684 503 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 PLCG1P19174 1290 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 UBASH3AP57075 661 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 GPNMBQ14956 572 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 NOLC1Q14978 699 aaKnown RBP eCLIP13.27□□□□□ -0.29
CLIP1-208ENST00000537004 PRR16Q569H4 304 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 TEX2Q8IWB9 1127 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 LRRC8AQ8IWT6 810 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 SMYD4Q8IYR2 804 aaPredicted RBP13.27□□□□□ -0.29
CLIP1-208ENST00000537004 DEFB123Q8N688 67 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 GJA10Q969M2 543 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 ZBTB10Q96DT7 871 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 PLIN2Q99541 437 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 IMPACTQ9P2X3 320 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 SLC9A2Q9UBY0 812 aa13.27□□□□□ -0.29
CLIP1-208ENST00000537004 C17orf102A2RUQ5 167 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 PPP1R3GB7ZBB8 358 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 PITPNM1O00562 1244 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 CCNE2O96020 404 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 FGBP02675 491 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 RPN1P04843 607 aaKnown RBP13.26□□□□□ -0.29
CLIP1-208ENST00000537004 CKBP12277 381 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 ZNF18P17022 549 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 FXR2P51116 673 aaKnown RBP eCLIP13.26□□□□□ -0.294e-6■■■□□ 18.2
CLIP1-208ENST00000537004 ACTR2P61160 394 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 TMEM266Q2M3C6 531 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 KLHL10Q6JEL2 608 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 TMC6Q7Z403 805 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 RETREG2Q8NC44 543 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 GLG1Q92896 1179 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 ATP6V0A1Q93050 837 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 MMTAG2Q9BU76 263 aaKnown RBP13.26□□□□□ -0.29
CLIP1-208ENST00000537004 CUEDC2Q9H467 287 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 MAGEF1Q9HAY2 307 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 SPTLC3Q9NUV7 552 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 KBTBD4Q9NVX7 518 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 RMND1Q9NWS8 449 aa13.26□□□□□ -0.29
CLIP1-208ENST00000537004 DHX15O43143 795 aaKnown RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 MYL1P05976 194 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 GSDMDP57764 484 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 BFSP2Q13515 415 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 ARID5BQ14865 1188 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 TRIM71Q2Q1W2 868 aaKnown RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 HSP90AA4PQ58FG1 418 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 PSRC1Q6PGN9 363 aaPredicted RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 LRRC15Q8TF66 581 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 LENG9Q96B70 501 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 DDX25Q9UHL0 483 aaKnown RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 ZNF215Q9UL58 517 aaPredicted RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 REV3LO60673 3130 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms