RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ATP2C1P98194 919 aaPredicted RBP14.53□□□□□ -0.08
VPS28-216ENST00000533806 DRP2Q13474 957 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 KIZQ2M2Z5 673 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 MTERF2Q49AM1 385 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 FAM43BQ6ZT52 329 aaPredicted RBP14.53□□□□□ -0.08
VPS28-216ENST00000533806 Q7L0L9 218 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 BRAPQ7Z569 592 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 TPH2Q8IWU9 490 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 CRIPAKQ8N1N5 446 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 ZNF710Q8N1W2 664 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 DEFB123Q8N688 67 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 SEMA6BQ9H3T3 888 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 TUFT1Q9NNX1 390 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 MTMR10Q9NXD2 777 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 PADI3Q9ULW8 664 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 PCDHA11Q9Y5I1 949 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 KAT6AQ92794 2004 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 MED24O75448 989 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 XRCC6P12956 609 aaKnown RBP eCLIP14.52□□□□□ -0.097e-6■□□□□ 8.8
VPS28-216ENST00000533806 RPA1P27694 616 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 CD52P31358 61 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 OTUD6AQ7L8S5 288 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 TMCO2Q7Z6W1 182 aaPredicted RBP14.52□□□□□ -0.09
VPS28-216ENST00000533806 RTN4RL1Q86UN2 441 aaPredicted RBP14.52□□□□□ -0.09
VPS28-216ENST00000533806 TIFAQ96CG3 184 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 TMX1Q9H3N1 280 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 SUGCTQ9HAC7 445 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 ERVK-5Q9HDB9 667 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 ANKEF1Q9NU02 776 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 MTMR6Q9Y217 621 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 NOC2LQ9Y3T9 749 aaKnown RBP14.52□□□□□ -0.09
VPS28-216ENST00000533806 MYH9P35579 1960 aaKnown RBP14.52□□□□□ -0.09
VPS28-216ENST00000533806 WDR81Q562E7 1941 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 SIP14410 1827 aa14.52□□□□□ -0.09
VPS28-216ENST00000533806 M0QZ92 97 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 ENPP3O14638 875 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 GJB5O95377 273 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 MYOGP15173 224 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 MUTP22033 750 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 RFC5P40937 340 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 KCNJ6P48051 423 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 GPC3P51654 580 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 NLRP11P59045 1033 aaKnown RBP14.51□□□□□ -0.09
VPS28-216ENST00000533806 RESTQ13127 1097 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 RAB30Q15771 203 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 ECM1Q16610 540 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 LINC01599Q8WXQ3 324 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 TOP1MTQ969P6 601 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 CEP170P1Q96L14 293 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 FOXD4L1Q9NU39 408 aa14.51□□□□□ -0.09
VPS28-216ENST00000533806 TRANK1O15050 2925 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 VPS37CA5D8V6 355 aaPredicted RBP14.5□□□□□ -0.09
VPS28-216ENST00000533806 RARRES1P49788 294 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 HTRA4P83105 476 aaPredicted RBP14.5□□□□□ -0.09
VPS28-216ENST00000533806 CDC42EP1Q00587 391 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 XKR9Q5GH70 373 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 ARL6IP4Q66PJ3 421 aaKnown RBP14.5□□□□□ -0.09
VPS28-216ENST00000533806 FERMT3Q86UX7 667 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 HSCBQ8IWL3 235 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 EXOC8Q8IYI6 725 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 PIGOQ8TEQ8 1089 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 GUCD1Q96NT3 240 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 MAP7D2Q96T17 732 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 OSMRQ99650 979 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 JPH2Q9BR39 696 aaPredicted RBP14.5□□□□□ -0.09
VPS28-216ENST00000533806 MMTAG2Q9BU76 263 aaKnown RBP14.5□□□□□ -0.09
VPS28-216ENST00000533806 XPNPEP1Q9NQW7 623 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 SUCLA2Q9P2R7 463 aaPredicted RBP14.5□□□□□ -0.09
VPS28-216ENST00000533806 LRWD1Q9UFC0 647 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 MSRAQ9UJ68 235 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 DBR1Q9UK59 544 aaKnown RBP14.5□□□□□ -0.09
VPS28-216ENST00000533806 AKT3Q9Y243 479 aa14.5□□□□□ -0.09
VPS28-216ENST00000533806 COL6A3P12111 3177 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 A0A087WWV3 80 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 STX6O43752 255 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 GAS2O43903 313 aaKnown RBP14.49□□□□□ -0.09
VPS28-216ENST00000533806 RPS6KA5O75582 802 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 ARHGEF15O94989 841 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 AMHP03971 560 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 DARSP14868 501 aaKnown RBP14.49□□□□□ -0.09
VPS28-216ENST00000533806 EIF4BP23588 611 aaKnown RBP14.49□□□□□ -0.09
VPS28-216ENST00000533806 DNM2P50570 870 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 PAK2Q13177 524 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 TMEM266Q2M3C6 531 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 ZNF697Q5TEC3 545 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 DTHD1Q6ZMT9 781 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 FAM228AQ86W67 206 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 PRPF31Q8WWY3 499 aaKnown RBP14.49□□□□□ -0.09
VPS28-216ENST00000533806 SLC7A3Q8WY07 619 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 NACC1Q96RE7 527 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 PPP1R16BQ96T49 567 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 RAD9AQ99638 391 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 FTHL17Q9BXU8 183 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 TSPYL2Q9H2G4 693 aaPredicted RBP14.49□□□□□ -0.09
VPS28-216ENST00000533806 NKX2-4Q9H2Z4 354 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 ZNF576Q9H609 170 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 ST3GAL5Q9UNP4 418 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 GINS2Q9Y248 185 aa14.49□□□□□ -0.09
VPS28-216ENST00000533806 GPR182O15218 404 aa14.48□□□□□ -0.09
VPS28-216ENST00000533806 MGEA5O60502 916 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms