RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 MYO1BO43795 1136 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 MBD3O95983 291 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 U2AF1L5P0DN76 240 aaPredicted RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 PSMA3P25788 255 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 TRHRP34981 398 aaPredicted RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 CCT6AP40227 531 aaKnown RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 TUBB4BP68371 445 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 CTAG1AP78358 180 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 U2AF1Q01081 240 aaKnown RBP eCLIP6.15□□□□□ -1.42
CD44-236ENST00000533222 NSUN2Q08J23 767 aaKnown RBP eCLIP6.15□□□□□ -1.42
CD44-236ENST00000533222 COX10Q12887 443 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 DYNC1I2Q13409 638 aaKnown RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 ARHGEF6Q15052 776 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 NFE2L2Q16236 605 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 TRIM71Q2Q1W2 868 aaKnown RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 LRRC23Q53EV4 343 aaPredicted RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 LRP10Q7Z4F1 713 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 ARHGAP22Q7Z5H3 698 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 JAZF1Q86VZ6 243 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 LRRC43Q8N309 656 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 PRPF38AQ8NAV1 312 aaKnown RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 AGBL5Q8NDL9 886 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 TMEM52Q8NDY8 209 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 SLC35B4Q969S0 331 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 HOOK2Q96ED9 719 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 MRFAP1L1Q96HT8 127 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 HHIPL1Q96JK4 782 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 CABS1Q96KC9 395 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 MAP3K14Q99558 947 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 IER2Q9BTL4 223 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 TSGA10Q9BZW7 698 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 DHX36Q9H2U1 1008 aaKnown RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 MRPL46Q9H2W6 279 aaKnown RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 MMADHCQ9H3L0 296 aaPredicted RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 ATP6V0A4Q9HBG4 840 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 GPRC5CQ9NQ84 441 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 ZNHIT6Q9NWK9 470 aaKnown RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 SEPT10Q9P0V9 454 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 FAN1Q9Y2M0 1017 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 LUC7L2Q9Y383 392 aaKnown RBP6.15□□□□□ -1.42
CD44-236ENST00000533222 BACE2Q9Y5Z0 518 aa6.15□□□□□ -1.42
CD44-236ENST00000533222 MAP3K1Q13233 1512 aa6.15□□□□□ -1.43
CD44-236ENST00000533222 RB1CC1Q8TDY2 1594 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 ERICH2A1L162 156 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 AGRPO00253 132 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 FGF10O15520 208 aaPredicted RBP6.14□□□□□ -1.43
CD44-236ENST00000533222 CYTH3O43739 400 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 THBDP07204 575 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 SNRPB2P08579 225 aaKnown RBP6.14□□□□□ -1.43
CD44-236ENST00000533222 TGFB3P10600 412 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 HNRNPH1P31943 449 aaKnown RBP6.14□□□□□ -1.43
CD44-236ENST00000533222 ECI1P42126 302 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 CCNHP51946 323 aaPredicted RBP6.14□□□□□ -1.43
CD44-236ENST00000533222 GFRA1P56159 465 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 HDAC4P56524 1084 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 WASHC5Q12768 1159 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 DHX8Q14562 1220 aaKnown RBP6.14□□□□□ -1.43
CD44-236ENST00000533222 KIR3DS1Q14943 382 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 MUM1Q2TAK8 710 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 TIGD5Q53EQ6 642 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 MBLAC2Q68D91 279 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 DENND5AQ6IQ26 1287 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 POMZP3Q6PJE2 187 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 NDUFAF2Q8N183 169 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 C3orf20Q8ND61 904 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 CCDC112Q8NEF3 446 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 B4GALNT2Q8NHY0 566 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 LINC01599Q8WXQ3 324 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 TAF4BQ92750 862 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 MAP6Q96JE9 813 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 RUFY1Q96T51 708 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 AARSD1Q9BTE6 412 aaKnown RBP6.14□□□□□ -1.43
CD44-236ENST00000533222 MOV10L1Q9BXT6 1211 aaKnown RBP6.14□□□□□ -1.43
CD44-236ENST00000533222 PRKRIP1Q9H875 184 aaPredicted RBP6.14□□□□□ -1.43
CD44-236ENST00000533222 SP110Q9HB58 689 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 PCDH18Q9HCL0 1135 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 CROTQ9UKG9 612 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 TMCC3Q9ULS5 477 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 LRPPRCP42704 1394 aaKnown RBP6.14□□□□□ -1.43
CD44-236ENST00000533222 ANKRD36BQ8N2N9 1353 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 KIF27Q86VH2 1401 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 VPS8Q8N3P4 1428 aa6.14□□□□□ -1.43
CD44-236ENST00000533222 BLACEA4D250 179 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 GOLGA6L4A6NEF3 574 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 C2orf71A6NGG8 1288 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 NOTOA8MTQ0 251 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ARNTLO00327 626 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 PRODHO43272 600 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ERLIN2O94905 339 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 S100A5P33763 92 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 GCKP35557 465 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 TCF7P36402 384 aaPredicted RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 KCNJ6P48051 423 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 AMPHP49418 695 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 PAPOLAP51003 745 aaKnown RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 GALK1P51570 392 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 TUBA4AP68366 448 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ZBED6P86452 979 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ADCY1Q08828 1119 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ZBTB17Q13105 803 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms