RNA–Protein interactions for RNA: ENST00000532088.1

COPB1-208, Transcript of coatomer protein complex subunit beta 1, human

TSL 3

Gene COPB1, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPB1-208	ENST00000532088	STK17A	Q9UEE5	414 aa		13.98	□□□□□ -0.17
COPB1-208	ENST00000532088	DBR1	Q9UK59	544 aa	Known RBP	13.98	□□□□□ -0.17
COPB1-208	ENST00000532088	PHF24	Q9UPV7	400 aa		13.98	□□□□□ -0.17
COPB1-208	ENST00000532088	COL1A2	P08123	1366 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088		H3BRB1	525 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	ZNF862	O60290	1169 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	HBP1	O60381	514 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	PRPF40A	O75400	957 aa	Known RBP	13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	STBD1	O95210	358 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	ASGR1	P07306	291 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	CDC25A	P30304	524 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	USP46	P62068	366 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	GRB10	Q13322	594 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	CTTN	Q14247	550 aa	Known RBP	13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	UGCG	Q16739	394 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	SPECC1	Q5M775	1068 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	UTP14C	Q5TAP6	766 aa	Known RBP	13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	USP49	Q70CQ1	688 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	OTUD6A	Q7L8S5	288 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	SESTD1	Q86VW0	696 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	BANK1	Q8NDB2	785 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	KAT2B	Q92831	832 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	PNMA5	Q96PV4	448 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	NIFK	Q9BYG3	293 aa	Known RBP	13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	TUT1	Q9H6E5	874 aa	Known RBP	13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	MAGEF1	Q9HAY2	307 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	NRBP2	Q9NSY0	501 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	LMBRD1	Q9NUN5	540 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	KCNH3	Q9ULD8	1083 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	WDR81	Q562E7	1941 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	LOXHD1	Q8IVV2	1947 aa		13.97	□□□□□ -0.17
COPB1-208	ENST00000532088	EYA4	O95677	639 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	MYL3	P08590	195 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	PFKFB1	P16118	471 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	ATP4A	P20648	1035 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	YWHAB	P31946	246 aa	Known RBP	13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	MCM4	P33991	863 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	ACLY	P53396	1101 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	PRKCE	Q02156	737 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	CYP4A11	Q02928	519 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	PTPN11	Q06124	597 aa	Predicted RBP	13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	PLCB4	Q15147	1175 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	ECM1	Q16610	540 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	RRAGB	Q5VZM2	374 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	TPH2	Q8IWU9	490 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	EXOC8	Q8IYI6	725 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	FSIP1	Q8NA03	581 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	IQUB	Q8NA54	791 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	RASSF8	Q8NHQ8	419 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	GLT1D1	Q96MS3	346 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	WRAP73	Q9P2S5	460 aa	Predicted RBP	13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	HCST	Q9UBK5	93 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	KIAA1024	Q9UPX6	916 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	DNM3	Q9UQ16	869 aa		13.96	□□□□□ -0.17
COPB1-208	ENST00000532088	SCN10A	Q9Y5Y9	1956 aa		13.96	□□□□□ -0.18
COPB1-208	ENST00000532088	MYH9	P35579	1960 aa	Known RBP	13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	RRN3P2	A6NIE6	340 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	TFRC	P02786	760 aa	Known RBP	13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	ZNF286B	P0CG31	522 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	PLCG1	P19174	1290 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	HOXC8	P31273	242 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	SYK	P43405	635 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	FAM160A1	Q05DH4	1040 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	KARS	Q15046	597 aa	Known RBP	13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	TARBP2	Q15633	366 aa	Known RBP	13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	ZNF484	Q5JVG2	852 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	NFRKB	Q6P4R8	1299 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	TRIM50	Q86XT4	487 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	CCDC34	Q96HJ3	373 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	DDX19A	Q9NUU7	478 aa	Known RBP	13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	KCND2	Q9NZV8	630 aa		13.95	□□□□□ -0.18
COPB1-208	ENST00000532088	NRCAM	Q92823	1304 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088		A0A1B0GVL5	298 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	GADD45B	O75293	160 aa	Predicted RBP	13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	GNAT1	P11488	350 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	STAT6	P42226	847 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	NDUFA8	P51970	172 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	TMEM132A	Q24JP5	1023 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	KIAA0753	Q2KHM9	967 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	CXCL17	Q6UXB2	119 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	ANO5	Q75V66	913 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	CKAP2L	Q8IYA6	745 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	SLC43A3	Q8NBI5	491 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	ENGASE	Q8NFI3	743 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	LARP4B	Q92615	738 aa	Known RBP	13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	RAD54L	Q92698	747 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	TIGD1	Q96MW7	591 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	TNMD	Q9H2S6	317 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	RNPEP	Q9H4A4	650 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	GOLPH3L	Q9H4A5	285 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088	BLOC1S4	Q9NUP1	217 aa		13.94	□□□□□ -0.18
COPB1-208	ENST00000532088		A0A087X0B3	334 aa		13.93	□□□□□ -0.18
COPB1-208	ENST00000532088		A0A0U1RQG5	324 aa	Predicted RBP	13.93	□□□□□ -0.18
COPB1-208	ENST00000532088		A0A1W2PQ45	241 aa	Predicted RBP	13.93	□□□□□ -0.18
COPB1-208	ENST00000532088		A0A1W2PQY0	241 aa		13.93	□□□□□ -0.18
COPB1-208	ENST00000532088	POLR2D	O15514	142 aa	Known RBP	13.93	□□□□□ -0.18
COPB1-208	ENST00000532088	GAS2	O43903	313 aa	Known RBP	13.93	□□□□□ -0.18
COPB1-208	ENST00000532088	MBD3	O95983	291 aa		13.93	□□□□□ -0.18

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