RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 FARP2O94887 1054 aaPredicted RBP23.45■■□□□ 1.34
VPS28-212ENST00000530836 EN2P19622 333 aaPredicted RBP23.45■■□□□ 1.34
VPS28-212ENST00000530836 ANKRD20A12PQ8NF67 263 aa23.45■■□□□ 1.34
VPS28-212ENST00000530836 KIAA0100Q14667 2235 aaKnown RBP23.45■■□□□ 1.34
VPS28-212ENST00000530836 FAM13AO94988 1023 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 ATP1A3P13637 1013 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 SOX10P56693 466 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 LRRC63Q05C16 580 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 LY6KQ17RY6 165 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 SWSAP1Q6NVH7 229 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 TTI2Q6NXR4 508 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 PADI6Q6TGC4 694 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 ZHX3Q9H4I2 956 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 MLXIPQ9HAP2 919 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 PARVGQ9HBI0 331 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 SAMSN1Q9NSI8 373 aaKnown RBP23.44■■□□□ 1.34
VPS28-212ENST00000530836 ZBTB39O15060 712 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 FGFR1OPO95684 399 aaKnown RBP23.44■■□□□ 1.34
VPS28-212ENST00000530836 PTMAP06454 111 aaKnown RBP23.44■■□□□ 1.34
VPS28-212ENST00000530836 ZNF131P52739 623 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 UBASH3AP57075 661 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 RAD51AP2Q09MP3 1159 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 UGCGQ16739 394 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 GJC2Q5T442 439 aaPredicted RBP23.44■■□□□ 1.34
VPS28-212ENST00000530836 TSG101Q99816 390 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 THAP9Q9H5L6 903 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 IFNKQ9P0W0 207 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 IGSF9BQ9UPX0 1349 aa23.44■■□□□ 1.34
VPS28-212ENST00000530836 IGKV6D-21A0A0A0MT36 114 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 BACH1O14867 736 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 DYNC1LI2O43237 492 aaPredicted RBP23.43■■□□□ 1.34
VPS28-212ENST00000530836 GGPS1O95749 300 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 PGK1P00558 417 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 PTGS1P23219 599 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 GJA9P57773 515 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 NKX3-2P78367 333 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 CACNB1Q02641 598 aaPredicted RBP23.43■■□□□ 1.34
VPS28-212ENST00000530836 CELF3Q5SZQ8 465 aaKnown RBP23.43■■□□□ 1.34
VPS28-212ENST00000530836 TLK2Q86UE8 772 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 DRC7Q8IY82 874 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 ARRDC4Q8NCT1 418 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 SEPT1Q8WYJ6 367 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 HPS3Q969F9 1004 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 UPF3AQ9H1J1 476 aaKnown RBP23.43■■□□□ 1.34
VPS28-212ENST00000530836 ZNF302Q9NR11 478 aa23.43■■□□□ 1.34
VPS28-212ENST00000530836 MAFBQ9Y5Q3 323 aaPredicted RBP23.43■■□□□ 1.34
VPS28-212ENST00000530836 ADAMTS4O75173 837 aa23.42■■□□□ 1.34
VPS28-212ENST00000530836 XKR3Q5GH77 459 aa23.42■■□□□ 1.34
VPS28-212ENST00000530836 FAM160B1Q5W0V3 765 aa23.42■■□□□ 1.34
VPS28-212ENST00000530836 STXBP4Q6ZWJ1 553 aa23.42■■□□□ 1.34
VPS28-212ENST00000530836 CCDC60Q8IWA6 550 aaPredicted RBP23.42■■□□□ 1.34
VPS28-212ENST00000530836 FAM114A1Q8IWE2 563 aa23.42■■□□□ 1.34
VPS28-212ENST00000530836 COPS5Q92905 334 aa23.42■■□□□ 1.34
VPS28-212ENST00000530836 XPO4Q9C0E2 1151 aaKnown RBP23.42■■□□□ 1.34
VPS28-212ENST00000530836 AP5M1Q9H0R1 490 aa23.42■■□□□ 1.34
VPS28-212ENST00000530836 BCAS3Q9H6U6 928 aa23.42■■□□□ 1.34
VPS28-212ENST00000530836 SPC25Q9HBM1 224 aa23.42■■□□□ 1.34
VPS28-212ENST00000530836 SP4Q02446 784 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 LRRC41Q15345 812 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 XKR9Q5GH70 373 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 SFR1Q86XK3 245 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 CSGALNACT2Q8N6G5 542 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 ANKLE1Q8NAG6 615 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 LRRC10BA6NIK2 292 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 EEF1GP26641 437 aaKnown RBP23.41■■□□□ 1.34
VPS28-212ENST00000530836 ANKRD40Q6AI12 368 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 PPP4R3CPQ6ZMV5 832 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 RNF180Q86T96 592 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 DHX37Q8IY37 1157 aaKnown RBP23.41■■□□□ 1.34
VPS28-212ENST00000530836 MYCT1Q8N699 235 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 KLHDC9Q8NEP7 349 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 AFAP1L1Q8TED9 768 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 DRC1Q96MC2 740 aa23.41■■□□□ 1.34
VPS28-212ENST00000530836 MRPL44Q9H9J2 332 aaKnown RBP23.41■■□□□ 1.34
VPS28-212ENST00000530836 LARSQ9P2J5 1176 aaKnown RBP23.41■■□□□ 1.34
VPS28-212ENST00000530836 EIF3DO15371 548 aaKnown RBP eCLIP23.4■■□□□ 1.34
VPS28-212ENST00000530836 ZNF862O60290 1169 aa23.4■■□□□ 1.34
VPS28-212ENST00000530836 GH1P01241 217 aa23.4■■□□□ 1.34
VPS28-212ENST00000530836 C6orf222P0C671 652 aaPredicted RBP23.4■■□□□ 1.34
VPS28-212ENST00000530836 MAPTP10636 758 aaKnown RBP23.4■■□□□ 1.34
VPS28-212ENST00000530836 MNX1P50219 401 aaPredicted RBP23.4■■□□□ 1.34
VPS28-212ENST00000530836 PMS1P54277 932 aaKnown RBP23.4■■□□□ 1.34
VPS28-212ENST00000530836 FILIP1LQ4L180 1135 aa23.4■■□□□ 1.34
VPS28-212ENST00000530836 ANO5Q75V66 913 aa23.4■■□□□ 1.34
VPS28-212ENST00000530836 SLC17A8Q8NDX2 589 aa23.4■■□□□ 1.34
VPS28-212ENST00000530836 OR6J1Q8NGC5 347 aa23.4■■□□□ 1.34
VPS28-212ENST00000530836 SEMA6BQ9H3T3 888 aa23.4■■□□□ 1.34
VPS28-212ENST00000530836 MAGEC2Q9UBF1 373 aaPredicted RBP23.4■■□□□ 1.34
VPS28-212ENST00000530836 UBE4BO95155 1302 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 GSTTP1A0A1W2PQM5 241 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 TRIM49BA6NDI0 452 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 RSPH10B2B2RC85 870 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 NOP56O00567 594 aaKnown RBP23.39■■□□□ 1.33
VPS28-212ENST00000530836 RSPH10BP0C881 870 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 CST5P28325 142 aaPredicted RBP23.39■■□□□ 1.33
VPS28-212ENST00000530836 PRKCEQ02156 737 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 ARHGAP1Q07960 439 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 LAMC2Q13753 1193 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 BMT2Q1RMZ1 405 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 EPM2AIP1Q7L775 607 aaPredicted RBP23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms