RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 CHD9Q3L8U1 2897 aa23.46■■□□□ 1.35
VPS28-203ENST00000524521 COL6A3P12111 3177 aa23.46■■□□□ 1.35
VPS28-203ENST00000524521 DKC1O60832 514 aaKnown RBP eCLIP23.46■■□□□ 1.35
VPS28-203ENST00000524521 ERVK-21P61565 698 aa23.46■■□□□ 1.35
VPS28-203ENST00000524521 GNL2Q13823 731 aaKnown RBP23.46■■□□□ 1.35
VPS28-203ENST00000524521 IL27Q8NEV9 243 aa23.46■■□□□ 1.35
VPS28-203ENST00000524521 LINC01599Q8WXQ3 324 aa23.46■■□□□ 1.35
VPS28-203ENST00000524521 TBC1D32Q96NH3 1257 aa23.46■■□□□ 1.35
VPS28-203ENST00000524521 GTPBP6O43824 516 aaPredicted RBP23.45■■□□□ 1.34
VPS28-203ENST00000524521 NEMFO60524 1076 aa23.45■■□□□ 1.34
VPS28-203ENST00000524521 TXKP42681 527 aa23.45■■□□□ 1.34
VPS28-203ENST00000524521 ODR4Q5SWX8 454 aa23.45■■□□□ 1.34
VPS28-203ENST00000524521 ANO5Q75V66 913 aa23.45■■□□□ 1.34
VPS28-203ENST00000524521 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.45■■□□□ 1.34
VPS28-203ENST00000524521 MICALL1Q8N3F8 863 aa23.45■■□□□ 1.34
VPS28-203ENST00000524521 SP7Q8TDD2 431 aaPredicted RBP23.45■■□□□ 1.34
VPS28-203ENST00000524521 ZNF668Q96K58 619 aaPredicted RBP23.45■■□□□ 1.34
VPS28-203ENST00000524521 FOXP1Q9H334 677 aaPredicted RBP23.45■■□□□ 1.34
VPS28-203ENST00000524521 ERVK-5Q9HDB9 667 aa23.45■■□□□ 1.34
VPS28-203ENST00000524521 RGL1Q9NZL6 768 aa23.45■■□□□ 1.34
VPS28-203ENST00000524521 ST3GAL5Q9UNP4 418 aa23.45■■□□□ 1.34
VPS28-203ENST00000524521 CDH23Q9H251 3354 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 GPR182O15218 404 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 MCM7P33993 719 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 SPIRE1Q08AE8 756 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 GRB10Q13322 594 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 PLA2G4FQ68DD2 849 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 DYDC2Q96IM9 177 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 TMX3Q96JJ7 454 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 CEP89Q96ST8 783 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 C17orf80Q9BSJ5 609 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 TSPYL2Q9H2G4 693 aaPredicted RBP23.44■■□□□ 1.34
VPS28-203ENST00000524521 TMX1Q9H3N1 280 aa23.44■■□□□ 1.34
VPS28-203ENST00000524521 TTC12Q9H892 705 aaPredicted RBP23.44■■□□□ 1.34
VPS28-203ENST00000524521 CD2BP2O95400 341 aaKnown RBP23.43■■□□□ 1.34
VPS28-203ENST00000524521 IBSPP21815 317 aaPredicted RBP23.43■■□□□ 1.34
VPS28-203ENST00000524521 DNM2P50570 870 aa23.43■■□□□ 1.34
VPS28-203ENST00000524521 CTTNQ14247 550 aaKnown RBP23.43■■□□□ 1.34
VPS28-203ENST00000524521 ZNF710Q8N1W2 664 aa23.43■■□□□ 1.34
VPS28-203ENST00000524521 SCLT1Q96NL6 688 aa23.43■■□□□ 1.34
VPS28-203ENST00000524521 LXNQ9BS40 222 aa23.43■■□□□ 1.34
VPS28-203ENST00000524521 ADAMTS10Q9H324 1103 aa23.43■■□□□ 1.34
VPS28-203ENST00000524521 WRAP73Q9P2S5 460 aaPredicted RBP23.43■■□□□ 1.34
VPS28-203ENST00000524521 MTCH2Q9Y6C9 303 aa23.43■■□□□ 1.34
VPS28-203ENST00000524521 DENND3A2RUS2 1198 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 POU3F3P20264 500 aaPredicted RBP23.42■■□□□ 1.34
VPS28-203ENST00000524521 NPEPPSP55786 919 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 CYP4A11Q02928 519 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 DRP2Q13474 957 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 FAM228AQ86W67 206 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 TPH2Q8IWU9 490 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 C4orf19Q8IY42 314 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 FIBCD1Q8N539 461 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 FBXO22Q8NEZ5 403 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 GDPD5Q8WTR4 605 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 MTMR9Q96QG7 549 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 ADAM2Q99965 735 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 CYP26B1Q9NR63 512 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 TTC3P53804 2025 aa23.42■■□□□ 1.34
VPS28-203ENST00000524521 IGKV6-21A0A0C4DH24 114 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 MGEA5O60502 916 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 LPXNO60711 386 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 MAFO75444 373 aaPredicted RBP23.41■■□□□ 1.34
VPS28-203ENST00000524521 STAG3L1P0CL83 205 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 MCM2P49736 904 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 GPC3P51654 580 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 ZNF174Q15697 407 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 FAM43BQ6ZT52 329 aaPredicted RBP23.41■■□□□ 1.34
VPS28-203ENST00000524521 OTUD6AQ7L8S5 288 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 NPAS4Q8IUM7 802 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 NOSTRINQ8IVI9 506 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 ZNF579Q8NAF0 562 aaKnown RBP23.41■■□□□ 1.34
VPS28-203ENST00000524521 NLRP7Q8WX94 980 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 CEP170P1Q96L14 293 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 EIF2AK1Q9BQI3 630 aaKnown RBP23.41■■□□□ 1.34
VPS28-203ENST00000524521 TMEM60Q9H2L4 133 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 ZSWIM4Q9H7M6 989 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 LRFN2Q9ULH4 789 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 KIF3AQ9Y496 699 aa23.41■■□□□ 1.34
VPS28-203ENST00000524521 DGKIO75912 1065 aa23.4■■□□□ 1.34
VPS28-203ENST00000524521 SLITRK3O94933 977 aa23.4■■□□□ 1.34
VPS28-203ENST00000524521 EIF4BP23588 611 aaKnown RBP23.4■■□□□ 1.34
VPS28-203ENST00000524521 YWHABP31946 246 aaKnown RBP23.4■■□□□ 1.34
VPS28-203ENST00000524521 SAMD11Q96NU1 681 aa23.4■■□□□ 1.34
VPS28-203ENST00000524521 JPH2Q9BR39 696 aaPredicted RBP23.4■■□□□ 1.34
VPS28-203ENST00000524521 PRDM6Q9NQX0 595 aa23.4■■□□□ 1.34
VPS28-203ENST00000524521 SUCLA2Q9P2R7 463 aaPredicted RBP23.4■■□□□ 1.34
VPS28-203ENST00000524521 ZBTB39O15060 712 aa23.39■■□□□ 1.33
VPS28-203ENST00000524521 CDC42EP1Q00587 391 aa23.39■■□□□ 1.33
VPS28-203ENST00000524521 BTG3Q14201 252 aaPredicted RBP23.39■■□□□ 1.33
VPS28-203ENST00000524521 EPC2Q52LR7 807 aa23.39■■□□□ 1.33
VPS28-203ENST00000524521 TMEM192Q8IY95 271 aa23.39■■□□□ 1.33
VPS28-203ENST00000524521 CRIPAKQ8N1N5 446 aa23.39■■□□□ 1.33
VPS28-203ENST00000524521 ZNF689Q96CS4 500 aaPredicted RBP23.39■■□□□ 1.33
VPS28-203ENST00000524521 RGS18Q9NS28 235 aa23.39■■□□□ 1.33
VPS28-203ENST00000524521 NOL7Q9UMY1 257 aaKnown RBP23.39■■□□□ 1.33
VPS28-203ENST00000524521 PCDHB7Q9Y5E2 793 aa23.39■■□□□ 1.33
VPS28-203ENST00000524521 ADGRA3Q8IWK6 1321 aa23.38■■□□□ 1.33
VPS28-203ENST00000524521 DARSP14868 501 aaKnown RBP23.38■■□□□ 1.33
VPS28-203ENST00000524521 SARSP49591 514 aaKnown RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms