RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 KRT85P78386 507 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 PIN1Q13526 163 aaPredicted RBP5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 NOLC1Q14978 699 aaKnown RBP eCLIP5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 ZBTB41Q5SVQ8 909 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 CCDC62Q6P9F0 684 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 LINC00482Q8N8I6 264 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 KYQ8NBH2 561 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 WRNIP1Q96S55 665 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 C11orf84Q9BUA3 381 aaPredicted RBP5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 OR10A5Q9H207 317 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 CCM2LQ9NUG4 571 aaPredicted RBP5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 DNAJC28Q9NX36 388 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 ZIM2Q9NZV7 527 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 ZFP69BQ9UJL9 534 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 NUMBLQ9Y6R0 609 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 KLHL33A6NCF5 533 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 CYP7B1O75881 506 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 RECQLP46063 649 aaPredicted RBP5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 NFATC3Q12968 1075 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 ADAM9Q13443 819 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 ACAP2Q15057 778 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 STILQ15468 1287 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 PITRM1Q5JRX3 1037 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 PHF19Q5T6S3 580 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 UNQ6494/PRO21346Q6UXR6 183 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 CXXC5Q7LFL8 322 aaKnown RBP5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 CHPFQ8IZ52 775 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 STPG3Q8N7X2 389 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 RAX2Q96IS3 184 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 ZSWIM3Q96MP5 696 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 CAMKK2Q96RR4 588 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 TACO1Q9BSH4 297 aaKnown RBP5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 QRSL1Q9H0R6 528 aaKnown RBP5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 LUC7LQ9NQ29 371 aaKnown RBP5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 ZNF180Q9UJW8 692 aa5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 LUC7L2Q9Y383 392 aaKnown RBP5.4□□□□□ -1.54
HMGB1P28-201ENST00000507778 MYPNQ86TC9 1320 aa5.4□□□□□ -1.55
HMGB1P28-201ENST00000507778 XPOTO43592 962 aaKnown RBP5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 TSPAN6O43657 245 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 PCDHGA12O60330 932 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 PCDH8O95206 1070 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 LPLP06858 475 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 MTHFD2P13995 350 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 ZSCAN20P17040 1043 aaPredicted RBP5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 TXKP42681 527 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 LIMS1P48059 325 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 IL13RA1P78552 427 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 MRPS9P82933 396 aaKnown RBP5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 SRSF2Q01130 221 aaKnown RBP5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 HSP90AB2PQ58FF8 381 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 TOR2AQ5JU69 321 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 EFCAB2Q5VUJ9 269 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 MCTP1Q6DN14 999 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 RSAD2Q8WXG1 361 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 ZBTB8AQ96BR9 441 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 NOX5Q96PH1 765 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 CDH19Q9H159 772 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 MTG2Q9H4K7 406 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 KCND1Q9NSA2 647 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 IP6K2Q9UHH9 426 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 CROTQ9UKG9 612 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 TMPRSS11EQ9UL52 423 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 DENND2AQ9ULE3 1009 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 EDARQ9UNE0 448 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 INVSQ9Y283 1065 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 PCDHGA9Q9Y5G4 932 aaKnown RBP5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 PCDHGA8Q9Y5G5 932 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 PCDHGA7Q9Y5G6 932 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 PCDHGA6Q9Y5G7 932 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 PCDHGA3Q9Y5H0 932 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 PCDHGA2Q9Y5H1 932 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 GPR45Q9Y5Y3 372 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 IRAK3Q9Y616 596 aa5.39□□□□□ -1.55
HMGB1P28-201ENST00000507778 ETV2O00321 342 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 ABLIM3O94929 683 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 CHGBP05060 677 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 PFKMP08237 780 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 CT47B1P0C2W7 299 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 CD83Q01151 205 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 MAP3K12Q12852 859 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 SMAD4Q13485 552 aaKnown RBP5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 ODF1Q14990 250 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 LRRC41Q15345 812 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 WDR72Q3MJ13 1102 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 KANK2Q63ZY3 851 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 SYDE1Q6ZW31 735 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 CPA6Q8N4T0 437 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 JPH3Q8WXH2 748 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 SSH1Q8WYL5 1049 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 TSR2Q969E8 191 aaKnown RBP5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 SIGLEC10Q96LC7 697 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 RTFDC1Q9BY42 306 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 KCTD10Q9H3F6 313 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 TCF7L1Q9HCS4 588 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 KCMF1Q9P0J7 381 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 FTSJ1Q9UET6 329 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 USP18Q9UMW8 372 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 ANKRD6Q9Y2G4 727 aa5.38□□□□□ -1.55
HMGB1P28-201ENST00000507778 PMF1-BGLAPU3KQ54 211 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms