RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 TNNC1P63316 161 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 CXCL9Q07325 125 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 YTHDF3Q7Z739 585 aaKnown RBP17.89■□□□□ 0.45
COL6A1-206ENST00000498614 GPATCH11Q8N954 259 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 FAM133AQ8N9E0 248 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 OR2W6PQ8NHA6 318 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 JDP2Q8WYK2 163 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 CENPHQ9H3R5 247 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 TAF1DQ9H5J8 278 aaPredicted RBP17.89■□□□□ 0.45
COL6A1-206ENST00000498614 TDRD3Q9H7E2 651 aaKnown RBP17.89■□□□□ 0.45
COL6A1-206ENST00000498614 TMEM59LQ9UK28 342 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 ZNRF3Q9ULT6 936 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 FRMD3A2A2Y4 597 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 SPDYE3A6NKU9 549 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 E7EVH7 732 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 GNA14O95837 355 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 IFT88Q13099 833 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 HLTFQ14527 1009 aaKnown RBP eCLIP17.88■□□□□ 0.45
COL6A1-206ENST00000498614 KCTD19Q17RG1 926 aaPredicted RBP17.88■□□□□ 0.45
COL6A1-206ENST00000498614 SYDE2Q5VT97 1194 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 MOXD1Q6UVY6 613 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 PROCA1Q8NCQ7 364 aaPredicted RBP17.88■□□□□ 0.45
COL6A1-206ENST00000498614 LENG9Q96B70 501 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 PLCB1Q9NQ66 1216 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 KCNK3O14649 394 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 FAM107AO95990 144 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 GH2P01242 217 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 SPATA31C1P0DKV0 1188 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 NR2F2P24468 414 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 HSD17B3P37058 310 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 EPS15P42566 896 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 CYP4A11Q02928 519 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 KLHL30Q0D2K2 578 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 GIT2Q14161 759 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 GOLPH3Q9H4A6 298 aa17.88■□□□□ 0.45
COL6A1-206ENST00000498614 PPANQ9NQ55 473 aaKnown RBP17.88■□□□□ 0.45
COL6A1-206ENST00000498614 PITPNM2Q9BZ72 1349 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 MARSP56192 900 aaKnown RBP17.87■□□□□ 0.45
COL6A1-206ENST00000498614 UAP1Q16222 522 aaPredicted RBP17.87■□□□□ 0.45
COL6A1-206ENST00000498614 PTPROQ16827 1216 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 SFR1Q86XK3 245 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 DDX42Q86XP3 938 aaKnown RBP eCLIP17.87■□□□□ 0.45
COL6A1-206ENST00000498614 SPICE1Q8N0Z3 855 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 ERMNQ8TAM6 284 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 CYP2W1Q8TAV3 490 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 REEP2Q9BRK0 252 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 ISCUQ9H1K1 167 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 DNM3Q9UQ16 869 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 H0YGN5 161 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 GSCP56915 257 aaPredicted RBP17.87■□□□□ 0.45
COL6A1-206ENST00000498614 RPS6KA1Q15418 735 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 ASIC2Q16515 512 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 Q4G0T1 1027 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 GMCL1P1Q8NEA9 526 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 TAF4BQ92750 862 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 MRIQ9BWK5 157 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 NFS1Q9Y697 457 aa17.87■□□□□ 0.45
COL6A1-206ENST00000498614 OPLAHO14841 1288 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 CETN3O15182 167 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 BMP3P12645 472 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 RPA1P27694 616 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 SREBF1P36956 1147 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 ACTN3Q08043 901 aaPredicted RBP17.86■□□□□ 0.45
COL6A1-206ENST00000498614 KCNH2Q12809 1159 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 RRP1BQ14684 758 aaKnown RBP17.86■□□□□ 0.45
COL6A1-206ENST00000498614 DNAAF5Q86Y56 855 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 NEUROG2Q9H2A3 272 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 BCAS3Q9H6U6 928 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 VCPKMTQ9H867 229 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 AIPL1Q9NZN9 384 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 GOLGA6L10A6NI86 522 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 RSPH10B2B2RC85 870 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 GCOM1H8Y6P7 765 aaPredicted RBP17.86■□□□□ 0.45
COL6A1-206ENST00000498614 MSH4O15457 936 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 SLC26A4O43511 780 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 RSPH10BP0C881 870 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 MYZAPP0CAP1 466 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 C6orf89Q6UWU4 347 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 LRIG3Q6UXM1 1119 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 SLC30A10Q6XR72 485 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 SYT2Q8N9I0 419 aaPredicted RBP17.86■□□□□ 0.45
COL6A1-206ENST00000498614 CYFIP2Q96F07 1278 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 GMCL1Q96IK5 515 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 GANQ9H2C0 597 aa17.86■□□□□ 0.45
COL6A1-206ENST00000498614 SMCHD1A6NHR9 2005 aa17.85■□□□□ 0.45
COL6A1-206ENST00000498614 A0A1W2PRG0 241 aa17.85■□□□□ 0.45
COL6A1-206ENST00000498614 TBX3O15119 743 aa17.85■□□□□ 0.45
COL6A1-206ENST00000498614 ACTN1P12814 892 aa17.85■□□□□ 0.45
COL6A1-206ENST00000498614 ZNF844Q08AG5 666 aa17.85■□□□□ 0.45
COL6A1-206ENST00000498614 EDRF1Q3B7T1 1238 aa17.85■□□□□ 0.45
COL6A1-206ENST00000498614 RSBN1LQ6PCB5 846 aaPredicted RBP17.85■□□□□ 0.45
COL6A1-206ENST00000498614 ZC3H3Q8IXZ2 948 aaKnown RBP17.85■□□□□ 0.45
COL6A1-206ENST00000498614 CCDC13Q8IYE1 715 aa17.85■□□□□ 0.45
COL6A1-206ENST00000498614 SCFD2Q8WU76 684 aa17.85■□□□□ 0.45
COL6A1-206ENST00000498614 AP1M1Q9BXS5 423 aa17.85■□□□□ 0.45
COL6A1-206ENST00000498614 HDAC9Q9UKV0 1011 aa17.85■□□□□ 0.45
COL6A1-206ENST00000498614 ZNF646O15015 1829 aaPredicted RBP17.85■□□□□ 0.45
COL6A1-206ENST00000498614 SOCS7O14512 581 aa17.84■□□□□ 0.45
COL6A1-206ENST00000498614 CEP104O60308 925 aa17.84■□□□□ 0.45
COL6A1-206ENST00000498614 KIF4AO95239 1232 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms