RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 DPF3Q92784 378 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 WNT8BQ93098 351 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 TOX2Q96NM4 488 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 CTAGE1Q96RT6 745 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 CEP89Q96ST8 783 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 BLOC1S4Q9NUP1 217 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 TMEM39AQ9NV64 488 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 PCDH10Q9P2E7 1040 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 TCHHQ07283 1943 aa13.25□□□□□ -0.29
CUX1-210ENST00000497815 MYH9P35579 1960 aaKnown RBP13.24□□□□□ -0.29
CUX1-210ENST00000497815 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.24□□□□□ -0.29
CUX1-210ENST00000497815 MBLAC1A4D2B0 266 aaPredicted RBP13.24□□□□□ -0.29
CUX1-210ENST00000497815 MAGEB2O15479 319 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 EVI5O60447 810 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 CLTBP09497 229 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 THPOP40225 353 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 RFC5P40937 340 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 RAD51AP2Q09MP3 1159 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 TMEM62Q0P6H9 643 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 PTK7Q13308 1070 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 DRP2Q13474 957 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 SH3RF1Q7Z6J0 888 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 GPBP1Q86WP2 473 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 IQUBQ8NA54 791 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 LARP4BQ92615 738 aaKnown RBP13.24□□□□□ -0.29
CUX1-210ENST00000497815 DHX38Q92620 1227 aaKnown RBP13.24□□□□□ -0.29
CUX1-210ENST00000497815 STAMQ92783 540 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 TMEM143Q96AN5 459 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 PPP1R16BQ96T49 567 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 MTRQ99707 1265 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 RUSC1Q9BVN2 902 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 ATP6V0A4Q9HBG4 840 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 POLD4Q9HCU8 107 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 STK17AQ9UEE5 414 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 HPSEQ9Y251 543 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 PCDHA2Q9Y5H9 948 aa13.24□□□□□ -0.29
CUX1-210ENST00000497815 WDR81Q562E7 1941 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 NPHP3-ACAD11A0A0J9YXS1 232 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 SMIM35A0A1B0GVV1 85 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 DGAT1O75907 488 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 KRT18P05783 430 aaKnown RBP13.23□□□□□ -0.29
CUX1-210ENST00000497815 CTSHP09668 335 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 SYKP43405 635 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 DNM2P50570 870 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 SLC12A3P55017 1021 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 E2F4Q16254 413 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 FAM102BQ5T8I3 360 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 TAF2Q6P1X5 1199 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 KCTD17Q8N5Z5 321 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 SYT2Q8N9I0 419 aaPredicted RBP13.23□□□□□ -0.29
CUX1-210ENST00000497815 ZNF668Q96K58 619 aaPredicted RBP13.23□□□□□ -0.29
CUX1-210ENST00000497815 PPP1R12CQ9BZL4 782 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 DHX33Q9H6R0 707 aaKnown RBP13.23□□□□□ -0.29
CUX1-210ENST00000497815 GPRC5CQ9NQ84 441 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 XPNPEP1Q9NQW7 623 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 PDLIM7Q9NR12 457 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 SERTAD1Q9UHV2 236 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 AKT3Q9Y243 479 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 PPME1Q9Y570 386 aa13.23□□□□□ -0.29
CUX1-210ENST00000497815 GOLGA6L22H0YM25 854 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 RBAK-RBAKDNI3L0D1 243 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 VTNP04004 478 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 SYN1P17600 705 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 LIG1P18858 919 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 CYP11B2P19099 503 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 TMOD1P28289 359 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 UBE2HP62256 183 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 MKRN4PQ13434 485 aaPredicted RBP13.22□□□□□ -0.29
CUX1-210ENST00000497815 LONRF3Q496Y0 759 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 RINT1Q6NUQ1 792 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 SV2BQ7L1I2 683 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 RSPH3Q86UC2 560 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 EXOC8Q8IYI6 725 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 CEP57L1Q8IYX8 460 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 KIAA0319LQ8IZA0 1049 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 CCDC155Q8N6L0 562 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 MAP7D2Q96T17 732 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 JPH2Q9BR39 696 aaPredicted RBP13.22□□□□□ -0.29
CUX1-210ENST00000497815 PYM1Q9BRP8 204 aaKnown RBP13.22□□□□□ -0.29
CUX1-210ENST00000497815 HIPK3Q9H422 1215 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 SUCLA2Q9P2R7 463 aaPredicted RBP13.22□□□□□ -0.29
CUX1-210ENST00000497815 TBX21Q9UL17 535 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 ARID2Q68CP9 1835 aa13.22□□□□□ -0.29
CUX1-210ENST00000497815 UMODL1Q5DID0 1318 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 IGKV6-21A0A0C4DH24 114 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 FAM237AA0A1B0GTK4 181 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 TRIM43BA6NCK2 446 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 ACTN4O43707 911 aaKnown RBP13.21□□□□□ -0.29
CUX1-210ENST00000497815 HIP1RO75146 1068 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 ZNF202O95125 648 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 CKBP12277 381 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 CYP2C18P33260 490 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 AFMP43652 599 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 BFSP2Q13515 415 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 TRIM71Q2Q1W2 868 aaKnown RBP13.21□□□□□ -0.29
CUX1-210ENST00000497815 ARSHQ5FYA8 562 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 ZNF618Q5T7W0 954 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 C1orf186Q6ZWK4 172 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 DYMQ7RTS9 669 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 RHPN2Q8IUC4 686 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms