RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 SQORQ9Y6N5 450 aa18.19■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 TET1Q8NFU7 2136 aa18.19■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 ABHD14A-ACY1A0A1B0GW23 586 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 RBAK-RBAKDNI3L0D1 243 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 ZBTB39O15060 712 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 EFCAB14O75071 495 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 MUTP22033 750 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 CCT6AP40227 531 aaKnown RBP18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 DNM2P50570 870 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 SMAD3P84022 425 aaKnown RBP18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 IKBKEQ14164 716 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 SF3A1Q15459 793 aaKnown RBP18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 KIZQ2M2Z5 673 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 FAM173BQ6P4H8 233 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 POTEGQ6S5H5 508 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 USP38Q8NB14 1042 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 SNX29Q8TEQ0 813 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 LRCH3Q96II8 777 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 CCDC43Q96MW1 224 aaKnown RBP18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 DHX33Q9H6R0 707 aaKnown RBP18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 GINS2Q9Y248 185 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 TRIOBPQ9H2D6 2365 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 EVPLQ92817 2033 aa18.18■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 RANBP2P49792 3224 aaKnown RBP18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 VWA3AA6NCI4 1184 aa18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 GPR32O75388 356 aa18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 XRCC6P12956 609 aaKnown RBP eCLIP18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 KCNJ6P48051 423 aa18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 RARRES1P49788 294 aa18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 WDR5P61964 334 aaKnown RBP18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 MKRN4PQ13434 485 aaPredicted RBP18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 DRP2Q13474 957 aa18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 KRT79Q5XKE5 535 aa18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 FAM109BQ6ICB4 259 aaPredicted RBP18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 ZNF710Q8N1W2 664 aa18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 PIGOQ8TEQ8 1089 aa18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 SLC9A7Q96T83 725 aa18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 CLIC4Q9Y696 253 aa18.17■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 PP2D1A8MPX8 630 aa18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 GAS2O43903 313 aaKnown RBP18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 ZSCAN22P10073 491 aaPredicted RBP18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 ATP2A2P16615 1042 aaKnown RBP18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 CD52P31358 61 aa18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 GPC3P51654 580 aa18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 CRYBB1P53674 252 aaPredicted RBP18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 NLRP11P59045 1033 aaKnown RBP18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 EMC2Q15006 297 aa18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 NACC1Q96RE7 527 aa18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 OSMRQ99650 979 aa18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 MTRQ99707 1265 aa18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 AGO3Q9H9G7 860 aaKnown RBP18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 CDHR5Q9HBB8 845 aa18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 BMP2KQ9NSY1 1161 aaPredicted RBP18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 SUCLA2Q9P2R7 463 aaPredicted RBP18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 DBR1Q9UK59 544 aaKnown RBP18.16■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 A0A087WWV3 80 aa18.15■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 GRXCR1A8MXD5 290 aa18.15■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 PAK2Q13177 524 aa18.15■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 ECM1Q16610 540 aa18.15■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 FOXD4L5Q5VV16 416 aaPredicted RBP18.15■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 PHOSPHO2Q8TCD6 241 aa18.15■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 TMEM40Q8WWA1 233 aa18.15■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 FOXD4L4Q8WXT5 416 aaPredicted RBP18.15■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 SCLT1Q96NL6 688 aa18.15■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 ADAMTS10Q9H324 1103 aa18.15■□□□□ 0.5
MSH5-SAPCD1-206ENST00000491552 MYH15Q9Y2K3 1946 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 RPS6KA5O75582 802 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 DGAT1O75907 488 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 F13A1P00488 732 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 CDC25AP30304 524 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 DEFB103AP81534 67 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 CDC42EP1Q00587 391 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PTPAQ15257 358 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ODR4Q5SWX8 454 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 RHPN2Q8IUC4 686 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 TCP11Q8WWU5 503 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 NLRP7Q8WX94 980 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PSPC1Q8WXF1 523 aaKnown RBP18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 TMEM143Q96AN5 459 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ZNF668Q96K58 619 aaPredicted RBP18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 AK8Q96MA6 479 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 USP28Q96RU2 1077 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 MMTAG2Q9BU76 263 aaKnown RBP18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ATP6V0A4Q9HBG4 840 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 DDX19AQ9NUU7 478 aaKnown RBP18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PADI3Q9ULW8 664 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 KIAA1024Q9UPX6 916 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 NOC2LQ9Y3T9 749 aaKnown RBP18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 MICAL3Q7RTP6 2002 aa18.14■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 USO1O60763 962 aaKnown RBP18.13■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 AMHP03971 560 aa18.13■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 CEBPZQ03701 1054 aaKnown RBP18.13■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PKP1Q13835 747 aa18.13■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 GPR153Q6NV75 609 aa18.13■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.13■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ZNF410Q86VK4 478 aa18.13■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ZNF396Q96N95 335 aaPredicted RBP18.13■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ERVK-5Q9HDB9 667 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms