RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 MB21D1Q8N884 522 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 COG1Q8WTW3 980 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 NUP133Q8WUM0 1156 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 NELFBQ8WX92 580 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 EPSTI1Q96J88 318 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 MYRFLQ96LU7 910 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 NUP88Q99567 741 aaPredicted RBP6.48□□□□□ -1.37
VPS41-214ENST00000490924 C7orf25Q9BPX7 421 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 MYL10Q9BUA6 226 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 SPZ1Q9BXG8 430 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 RNF208Q9H0X6 261 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 LUC7LQ9NQ29 371 aaKnown RBP6.48□□□□□ -1.37
VPS41-214ENST00000490924 MAGEC2Q9UBF1 373 aaPredicted RBP6.48□□□□□ -1.37
VPS41-214ENST00000490924 LRFN2Q9ULH4 789 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 NOVA2Q9UNW9 492 aaKnown RBP6.48□□□□□ -1.37
VPS41-214ENST00000490924 PLAGL2Q9UPG8 496 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 HIF3AQ9Y2N7 669 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 ROBO1Q9Y6N7 1651 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 ITGB4P16144 1822 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 XIRP1Q702N8 1843 aaKnown RBP6.48□□□□□ -1.37
VPS41-214ENST00000490924 SPATA31A6Q5VVP1 1343 aa6.48□□□□□ -1.37
VPS41-214ENST00000490924 SLIT2O94813 1529 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 TNRC6CQ9HCJ0 1690 aaKnown RBP6.47□□□□□ -1.37
VPS41-214ENST00000490924 SSU72P8A0A1W2PR75 194 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 EXOC5O00471 708 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 PJA2O43164 708 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 USO1O60763 962 aaKnown RBP6.47□□□□□ -1.37
VPS41-214ENST00000490924 PPFIA4O75335 1185 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 SEC31AO94979 1220 aaKnown RBP6.47□□□□□ -1.37
VPS41-214ENST00000490924 CPP00450 1065 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 PARP1P09874 1014 aaKnown RBP6.47□□□□□ -1.37
VPS41-214ENST00000490924 BMP3P12645 472 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 GPTP24298 496 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 STAT6P42226 847 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 NOVP48745 357 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 VAV2P52735 878 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 LRRC63Q05C16 580 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 PSMD2Q13200 908 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 GRM4Q14833 912 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 ZNF827Q17R98 1081 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 SUSD4Q5VX71 490 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 RRAGBQ5VZM2 374 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 ALS2CLQ60I27 953 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 BEND4Q6ZU67 534 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 USP49Q70CQ1 688 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 SRLQ86TD4 932 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 RAB11FIP4Q86YS3 637 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 IRF2BP1Q8IU81 584 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 ZDHHC13Q8IUH4 622 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 ANKRD18AQ8IVF6 992 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 WNT8BQ93098 351 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 NSUN4Q96CB9 384 aaKnown RBP6.47□□□□□ -1.37
VPS41-214ENST00000490924 SHISA4Q96DD7 197 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 FAM83CQ9BQN1 747 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 DESI2Q9BSY9 194 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 RASSF4Q9H2L5 321 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 PDE11AQ9HCR9 933 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 ABCB6Q9NP58 842 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 DCP1AQ9NPI6 582 aaPredicted RBP6.47□□□□□ -1.37
VPS41-214ENST00000490924 LZTFL1Q9NQ48 299 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 EXOC1Q9NV70 894 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 BARHL2Q9NY43 387 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 ABI2Q9NYB9 513 aaPredicted RBP6.47□□□□□ -1.37
VPS41-214ENST00000490924 VPS54Q9P1Q0 977 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 FAM184BQ9ULE4 1060 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 CTNND2Q9UQB3 1225 aa6.47□□□□□ -1.37
VPS41-214ENST00000490924 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.47□□□□□ -1.37
VPS41-214ENST00000490924 WNK3Q9BYP7 1800 aa6.46□□□□□ -1.37
VPS41-214ENST00000490924 CCDC194A0A1B0GVG4 234 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 TTC26A0AVF1 554 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 HMX2A2RU54 273 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 BTNL10A8MVZ5 291 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 H3BQF6 201 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 RBAK-RBAKDNI3L0D1 243 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 NPHP1O15259 732 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 PRKAB2O43741 272 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 KLRC4O43908 158 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 EIF4EBP3O60516 100 aaPredicted RBP6.46□□□□□ -1.38
VPS41-214ENST00000490924 GNA11P29992 359 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 UBA7P41226 1012 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 PRCPP42785 496 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 AFMP43652 599 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 NLRP5P59047 1200 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 VSNL1P62760 191 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 GSTO1P78417 241 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 UBXN1Q04323 297 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 KIF5AQ12840 1032 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 PPFIA1Q13136 1202 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 PDIA5Q14554 519 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 MTF1Q14872 753 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 KARSQ15046 597 aaKnown RBP6.46□□□□□ -1.38
VPS41-214ENST00000490924 NAALADL2Q58DX5 795 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 RRP12Q5JTH9 1297 aaKnown RBP6.46□□□□□ -1.38
VPS41-214ENST00000490924 SPECC1Q5M775 1068 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 FKBP15Q5T1M5 1219 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 RCSD1Q6JBY9 416 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 FAM20CQ8IXL6 584 aa6.46□□□□□ -1.38
VPS41-214ENST00000490924 GUF1Q8N442 669 aaKnown RBP6.46□□□□□ -1.38
VPS41-214ENST00000490924 SRBD1Q8N5C6 995 aaKnown RBP6.46□□□□□ -1.38
VPS41-214ENST00000490924 GALNT11Q8NCW6 608 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms