RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 PYGMP11217 842 aa4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 RALBP1Q15311 655 aa4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 C21orf62-AS1Q17RA5 79 aa4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 BTBD8Q5XKL5 378 aa4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 ARHGAP36Q6ZRI8 547 aa4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 OSTM1Q86WC4 334 aa4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 PCDH19Q8TAB3 1148 aa4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 IPO9Q96P70 1041 aaKnown RBP4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 TACO1Q9BSH4 297 aaKnown RBP4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 SIRPGQ9P1W8 387 aa4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 PNMA2Q9UL42 364 aa4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 PCDHA9Q9Y5H5 950 aa4.21□□□□□ -1.74
DEPDC1-204ENST00000489862 KDM2BQ8NHM5 1336 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 FAM90A27PA6NNH2 459 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 PRC1O43663 620 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 AMY2AP04746 511 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 AMY2BP19961 511 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 CTGFP29279 349 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 SUMO1P63165 101 aaKnown RBP4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 GUCY1A3Q02108 690 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 BIRC2Q13490 618 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 USP39Q53GS9 565 aaKnown RBP4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 BRDTQ58F21 947 aaPredicted RBP4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 SPTY2D1Q68D10 685 aaPredicted RBP4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 Q6ZUG5 572 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 MAMDC2Q7Z304 686 aaPredicted RBP4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 GPR155Q7Z3F1 870 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 C11orf96Q7Z7L8 435 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 NME8Q8N427 588 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 CATSPERZQ9NTU4 200 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 RIC8BQ9NVN3 520 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 CBLCQ9ULV8 474 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 PRKAB1Q9Y478 270 aa4.2□□□□□ -1.74
DEPDC1-204ENST00000489862 MAN2B1O00754 1011 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 KCNK3O14649 394 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 WNT9AO14904 365 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 VIL1P09327 827 aaKnown RBP4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 PDE6AP16499 860 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 PTPN1P18031 435 aaKnown RBP4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 KRT15P19012 456 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 DBPQ10586 325 aaPredicted RBP4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 GPR19Q15760 415 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 C4orf46Q504U0 113 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 PTRH1Q86Y79 214 aaKnown RBP4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 APPBP2Q92624 585 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 FBXW5Q969U6 566 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 DHRS4Q9BTZ2 278 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 TMEM260Q9NX78 707 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 TERF2IPQ9NYB0 399 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 SRPK3Q9UPE1 567 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 PTPN22Q9Y2R2 807 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 BICRAQ9NZM4 1560 aa4.19□□□□□ -1.74
DEPDC1-204ENST00000489862 ARVCFO00192 962 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 RAMP2O60895 175 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 CRTAMO95727 393 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 CHGBP05060 677 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 CSF2RBP32927 897 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 GNALP38405 381 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 JAM2P57087 298 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 RALYLQ86SE5 291 aaKnown RBP4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 WDR75Q8IWA0 830 aaKnown RBP4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 NLGN4XQ8N0W4 816 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 AJUBAQ96IF1 538 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 C8orf48Q96LL4 319 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 PRRX2Q99811 253 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 MAF1Q9H063 256 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 MEGF9Q9H1U4 602 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 MRPS23Q9Y3D9 190 aaKnown RBP4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 UNC13AQ9UPW8 1703 aa4.18□□□□□ -1.74
DEPDC1-204ENST00000489862 H0Y858 1186 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 PPP1R12AO14974 1030 aaPredicted RBP4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 CNOT4O95628 575 aaKnown RBP4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 ZNF888P0CJ79 500 aaPredicted RBP4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 CDK4P11802 303 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 BMP5P22003 454 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 DNM2P50570 870 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 GABREP78334 506 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 ST5P78524 1137 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 FOXD4Q12950 439 aaPredicted RBP4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 UBE4AQ14139 1066 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 SYCP2LQ5T4T6 812 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 C16orf59Q7L2K0 433 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 KATNBL1Q9H079 304 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 TYW1Q9NV66 732 aaKnown RBP4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 CD2APQ9Y5K6 639 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 ATP23Q9Y6H3 246 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 CCDC189A1A4V9 331 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 CCDC66A2RUB6 948 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 EIF3JO75822 258 aaKnown RBP4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 CRY1Q16526 586 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 HSP90AB4PQ58FF6 505 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 EP400NLQ6ZTU2 488 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 ZC3H7AQ8IWR0 971 aaKnown RBP4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 UBR7Q8N806 425 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 IL17RAQ96F46 866 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 GNRHR2Q96P88 292 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 ADOQ96SZ5 270 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 SLC52A2Q9HAB3 445 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 SMURF1Q9HCE7 757 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 HOMER2Q9NSB8 354 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms