RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 QARSP47897 775 aaKnown RBP15.61■□□□□ 0.09
SYNE1-226ENST00000488376 TOB1P50616 345 aaPredicted RBP15.61■□□□□ 0.09
SYNE1-226ENST00000488376 EPHA7Q15375 998 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 SLFN12Q8IYM2 578 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 USP38Q8NB14 1042 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 MAFAQ8NHW3 353 aaPredicted RBP15.61■□□□□ 0.09
SYNE1-226ENST00000488376 TOP1MTQ969P6 601 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 RAD9AQ99638 391 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 ADAMTS10Q9H324 1103 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 ERVK-5Q9HDB9 667 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 BMP2KQ9NSY1 1161 aaPredicted RBP15.61■□□□□ 0.09
SYNE1-226ENST00000488376 MTUS1Q9ULD2 1270 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 AKT3Q9Y243 479 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 MICAL3Q7RTP6 2002 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 KAT6AQ92794 2004 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 MAGEB2O15479 319 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 SLITRK3O94933 977 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 BAG4O95429 457 aaKnown RBP15.6■□□□□ 0.09
SYNE1-226ENST00000488376 P4HBP07237 508 aaKnown RBP15.6■□□□□ 0.09
SYNE1-226ENST00000488376 U2AF2P26368 475 aaKnown RBP eCLIP15.6■□□□□ 0.09
SYNE1-226ENST00000488376 NLRP11P59045 1033 aaKnown RBP15.6■□□□□ 0.09
SYNE1-226ENST00000488376 HTRA4P83105 476 aaPredicted RBP15.6■□□□□ 0.09
SYNE1-226ENST00000488376 TBC1D8BQ0IIM8 1120 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 PAK2Q13177 524 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 TTC38Q5R3I4 469 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 FAM228AQ86W67 206 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 ARNTL2Q8WYA1 636 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 EIF2AK1Q9BQI3 630 aaKnown RBP15.6■□□□□ 0.09
SYNE1-226ENST00000488376 PCDHA12Q9UN75 941 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 WDR81Q562E7 1941 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 COL4A6Q14031 1691 aa15.6■□□□□ 0.09
SYNE1-226ENST00000488376 IGKV6-21A0A0C4DH24 114 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 CSDE1O75534 798 aaKnown RBP15.59■□□□□ 0.09
SYNE1-226ENST00000488376 RPLP2P05387 115 aaKnown RBP15.59■□□□□ 0.09
SYNE1-226ENST00000488376 IBSPP21815 317 aaPredicted RBP15.59■□□□□ 0.09
SYNE1-226ENST00000488376 FGFR4P22455 802 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 GPC3P51654 580 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 CRYBB1P53674 252 aaPredicted RBP15.59■□□□□ 0.09
SYNE1-226ENST00000488376 NFX1Q12986 1120 aaKnown RBP15.59■□□□□ 0.09
SYNE1-226ENST00000488376 GNL2Q13823 731 aaKnown RBP15.59■□□□□ 0.09
SYNE1-226ENST00000488376 KSR1Q8IVT5 923 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 TPH2Q8IWU9 490 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 CRIPAKQ8N1N5 446 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 C4orf32Q8N8J7 132 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 HSD17B14Q9BPX1 270 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 CYP26B1Q9NR63 512 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 ST3GAL5Q9UNP4 418 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 PCDHB6Q9Y5E3 794 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 SQORQ9Y6N5 450 aa15.59■□□□□ 0.09
SYNE1-226ENST00000488376 MAFO75444 373 aaPredicted RBP15.58■□□□□ 0.08
SYNE1-226ENST00000488376 RPS6KA5O75582 802 aa15.58■□□□□ 0.08
SYNE1-226ENST00000488376 IGFBP4P22692 258 aa15.58■□□□□ 0.08
SYNE1-226ENST00000488376 YWHABP31946 246 aaKnown RBP15.58■□□□□ 0.08
SYNE1-226ENST00000488376 MCM2P49736 904 aa15.58■□□□□ 0.08
SYNE1-226ENST00000488376 GATMP50440 423 aa15.58■□□□□ 0.08
SYNE1-226ENST00000488376 C4orf19Q8IY42 314 aa15.58■□□□□ 0.08
SYNE1-226ENST00000488376 SP7Q8TDD2 431 aaPredicted RBP15.58■□□□□ 0.08
SYNE1-226ENST00000488376 GDPD5Q8WTR4 605 aa15.58■□□□□ 0.08
SYNE1-226ENST00000488376 CEP170P1Q96L14 293 aa15.58■□□□□ 0.08
SYNE1-226ENST00000488376 MAP7D2Q96T17 732 aa15.58■□□□□ 0.08
SYNE1-226ENST00000488376 C17orf80Q9BSJ5 609 aa15.58■□□□□ 0.08
SYNE1-226ENST00000488376 RC3H2Q9HBD1 1191 aaKnown RBP15.58■□□□□ 0.08
SYNE1-226ENST00000488376 INSL6Q9Y581 213 aa15.58■□□□□ 0.08
SYNE1-226ENST00000488376 MYH9P35579 1960 aaKnown RBP15.58■□□□□ 0.08
SYNE1-226ENST00000488376 LPXNO60711 386 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 OR52Z1P0C646 297 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 SPATA31C1P0DKV0 1188 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 TECP42680 631 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 CUL4AQ13619 759 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 CCDC85BQ15834 202 aaPredicted RBP15.57■□□□□ 0.08
SYNE1-226ENST00000488376 MCTP1Q6DN14 999 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 PPM1EQ8WY54 764 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 TMEM143Q96AN5 459 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 YME1L1Q96TA2 773 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 GAS2L1Q99501 681 aaPredicted RBP15.57■□□□□ 0.08
SYNE1-226ENST00000488376 TSPYL2Q9H2G4 693 aaPredicted RBP15.57■□□□□ 0.08
SYNE1-226ENST00000488376 ZSWIM4Q9H7M6 989 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 PRDM6Q9NQX0 595 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 SMC3Q9UQE7 1217 aa15.57■□□□□ 0.08
SYNE1-226ENST00000488376 MED24O75448 989 aa15.56■□□□□ 0.08
SYNE1-226ENST00000488376 LINC00271P0C7V0 271 aa15.56■□□□□ 0.08
SYNE1-226ENST00000488376 DARSP14868 501 aaKnown RBP15.56■□□□□ 0.08
SYNE1-226ENST00000488376 TMOD1P28289 359 aa15.56■□□□□ 0.08
SYNE1-226ENST00000488376 GRB10Q13322 594 aa15.56■□□□□ 0.08
SYNE1-226ENST00000488376 DSC3Q14574 896 aa15.56■□□□□ 0.08
SYNE1-226ENST00000488376 IL17AQ16552 155 aa15.56■□□□□ 0.08
SYNE1-226ENST00000488376 RHPN2Q8IUC4 686 aa15.56■□□□□ 0.08
SYNE1-226ENST00000488376 PIGOQ8TEQ8 1089 aa15.56■□□□□ 0.08
SYNE1-226ENST00000488376 NLRP7Q8WX94 980 aa15.56■□□□□ 0.08
SYNE1-226ENST00000488376 ADAM2Q99965 735 aa15.56■□□□□ 0.08
SYNE1-226ENST00000488376 DHX33Q9H6R0 707 aaKnown RBP15.56■□□□□ 0.08
SYNE1-226ENST00000488376 SUCLA2Q9P2R7 463 aaPredicted RBP15.56■□□□□ 0.08
SYNE1-226ENST00000488376 COL4A4P53420 1690 aaPredicted RBP15.56■□□□□ 0.08
SYNE1-226ENST00000488376 EVPLQ92817 2033 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 A0A087WZ62 844 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 EIF4BP23588 611 aaKnown RBP15.55■□□□□ 0.08
SYNE1-226ENST00000488376 TRAPPC10P48553 1259 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 ERVK-21P61565 698 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 EMC2Q15006 297 aa15.55■□□□□ 0.08
SYNE1-226ENST00000488376 XKR9Q5GH70 373 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms