RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 ATP11AP98196 1134 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 GLE1Q53GS7 698 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 SFR1Q86XK3 245 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 MSL3Q8N5Y2 521 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 KIAA0895Q8NCT3 520 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 RAD54LQ92698 747 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 CHMP6Q96FZ7 201 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 PRMT1Q99873 361 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 ZMYND12Q9H0C1 365 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 CTTNBP2NLQ9P2B4 639 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 OGFOD1Q8N543 542 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 RTFDC1Q9BY42 306 aaPredicted RBP13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 NOD2Q9HC29 1040 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 MTRF1LQ9UGC7 380 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 FGFR4P22455 802 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 GRB10Q13322 594 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 PRKG1Q13976 671 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 TRIP13Q15645 432 aaPredicted RBP13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 TMEM132AQ24JP5 1023 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 ABCB5Q2M3G0 1257 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 FAM47EQ6ZV65 393 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 GLG1Q92896 1179 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 DAAM1Q9Y4D1 1078 aa13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.37□□□□□ -0.27
SHROOM3-208ENST00000486758 FSBPO95073 299 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 HARSP12081 509 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 MEA1Q16626 185 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 EXOC3L4Q17RC7 722 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 GNPTABQ3T906 1256 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 CCDC127Q96BQ5 260 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 NT5C3AQ9H0P0 336 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 TAOK3Q9H2K8 898 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 JMJD4Q9H9V9 463 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 ASIC3Q9UHC3 531 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 RASAL2Q9UJF2 1139 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 KCNB1Q14721 858 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 ACCSLQ4AC99 568 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 FHDC1Q9C0D6 1143 aaPredicted RBP13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 KBTBD4Q9NVX7 518 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 TMOD4Q9NZQ9 345 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 DBR1Q9UK59 544 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 CCDC169A6NNP5 214 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 GAS7O60861 476 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 BBOX1O75936 387 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 GCFC2P16383 781 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 FLT3P36888 993 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 CALCOCO2Q13137 446 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 SNX1Q13596 522 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 INTS8Q75QN2 995 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 ZFPM1Q8IX07 1006 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 USP38Q8NB14 1042 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 TNFRSF25Q93038 417 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 CUEDC2Q9H467 287 aa13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 DDX4Q9NQI0 724 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-208ENST00000486758 DNM1LO00429 736 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 ZBTB5O15062 677 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 PPIP5K2O43314 1243 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 KIF1CO43896 1103 aaKnown RBP13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 SKOR1P84550 965 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 KCNH2Q12809 1159 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 NSMFQ6X4W1 530 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 SPZ1Q9BXG8 430 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 HDAC9Q9UKV0 1011 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 ATP6V0A2Q9Y487 856 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 ATRNO75882 1429 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 SPOPO43791 374 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 CAND2O75155 1236 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 SLC9A1P19634 815 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 PPP1R2P41236 205 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 ANKRD20A8PQ5CZ79 823 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 ZNF449Q6P9G9 518 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 GJB7Q6PEY0 223 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 C16orf86Q6ZW13 317 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 MIEF2Q96C03 454 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 CPSF2Q9P2I0 782 aaKnown RBP13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 STK17AQ9UEE5 414 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 ECM29Q5VYK3 1845 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 STX2P32856 288 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 PRCCQ92733 491 aaPredicted RBP13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 CAVIN3Q969G5 261 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 BICD1Q96G01 975 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 ERGIC2Q96RQ1 377 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 AMNQ9BXJ7 453 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 KIF9Q9HAQ2 790 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 TMBIM4Q9HC24 238 aa13.35□□□□□ -0.27
SHROOM3-208ENST00000486758 ARHGEF35A5YM69 484 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 RSPH10B2B2RC85 870 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 EVI5O60447 810 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 RSPH10BP0C881 870 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 TNFAIP3P21580 790 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 CRKP46108 304 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 DR1Q01658 176 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 ZNF844Q08AG5 666 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 TAF11Q15544 211 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 MIIPQ5JXC2 388 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 CYP2W1Q8TAV3 490 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 NEK9Q8TD19 979 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 FBF1Q8TES7 1133 aa13.34□□□□□ -0.27
SHROOM3-208ENST00000486758 RAB17Q9H0T7 212 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms