RNA–Protein interactions for RNA: ENST00000481786.1

USH2A-204, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-204ENST00000481786 MYOTQ9UBF9 498 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 ASH2LQ9UBL3 628 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 WASF3Q9UPY6 502 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 TRAF6Q9Y4K3 522 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 KDM2BQ8NHM5 1336 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 ATP7AQ04656 1500 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 UGGT1Q9NYU2 1555 aa3.32□□□□□ -1.88
USH2A-204ENST00000481786 COL16A1Q07092 1604 aaPredicted RBP3.32□□□□□ -1.88
USH2A-204ENST00000481786 STRCP1A6NGW2 1772 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 PHLPP1O60346 1717 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 BCL9LQ86UU0 1499 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 MSH6P52701 1360 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 KRIT1O00522 736 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 SLC27A2O14975 620 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 NKRFO15226 690 aaKnown RBP eCLIP3.31□□□□□ -1.88
USH2A-204ENST00000481786 MAFKO60675 156 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 CNOT4O95628 575 aaKnown RBP3.31□□□□□ -1.88
USH2A-204ENST00000481786 LRG1P02750 347 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 SOD2P04179 222 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 COL6A2P12110 1019 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 MCM7P33993 719 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 NKX3-2P78367 333 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 FNDC7Q5VTL7 733 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 GGT6Q6P531 493 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 TEPPQ6URK8 271 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 MAMDC2Q7Z304 686 aaPredicted RBP3.31□□□□□ -1.88
USH2A-204ENST00000481786 RBM12BQ8IXT5 1001 aaKnown RBP3.31□□□□□ -1.88
USH2A-204ENST00000481786 CLEC4DQ8WXI8 215 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 LARP4BQ92615 738 aaKnown RBP3.31□□□□□ -1.88
USH2A-204ENST00000481786 PTPRN2Q92932 1015 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 TOE1Q96GM8 510 aaKnown RBP3.31□□□□□ -1.88
USH2A-204ENST00000481786 IPO9Q96P70 1041 aaKnown RBP3.31□□□□□ -1.88
USH2A-204ENST00000481786 SRPK1Q96SB4 655 aaKnown RBP3.31□□□□□ -1.88
USH2A-204ENST00000481786 DNAJC2Q99543 621 aaKnown RBP3.31□□□□□ -1.88
USH2A-204ENST00000481786 KCNJ15Q99712 375 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 DHRS4Q9BTZ2 278 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 PDGFDQ9GZP0 370 aaPredicted RBP3.31□□□□□ -1.88
USH2A-204ENST00000481786 IPPKQ9H8X2 491 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 L2HGDHQ9H9P8 463 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 HSPBP1Q9NZL4 362 aa3.31□□□□□ -1.88
USH2A-204ENST00000481786 MRPS23Q9Y3D9 190 aaKnown RBP3.31□□□□□ -1.88
USH2A-204ENST00000481786 ABCC3O15438 1527 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 ARHGAP5Q13017 1502 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 MIA2Q96PC5 1412 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 FAM47E-STBD1D6RA91 191 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 AQP7O14520 342 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 WNT9AO14904 365 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 GNAT1P11488 350 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 GABREP78334 506 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 SPIRE1Q08AE8 756 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 ZC3H12BQ5HYM0 836 aaKnown RBP3.3□□□□□ -1.88
USH2A-204ENST00000481786 AGBL4Q5VU57 503 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 DEFB132Q7Z7B7 95 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 TRIM48Q8IWZ4 208 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 LILRB2Q8N423 598 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 TTLL11Q8NHH1 800 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 PCDH19Q8TAB3 1148 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 UHMK1Q8TAS1 419 aaKnown RBP3.3□□□□□ -1.88
USH2A-204ENST00000481786 YIPF4Q9BSR8 244 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 ALG1Q9BT22 464 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 OSBPL2Q9H1P3 480 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 CROTQ9UKG9 612 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 TRPC5Q9UL62 973 aaPredicted RBP3.3□□□□□ -1.88
USH2A-204ENST00000481786 TELO2Q9Y4R8 837 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 PCDHA8Q9Y5H6 950 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 CLTCQ00610 1675 aaKnown RBP3.3□□□□□ -1.88
USH2A-204ENST00000481786 KIF14Q15058 1648 aa3.3□□□□□ -1.88
USH2A-204ENST00000481786 MAP3K1Q13233 1512 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 PZPP20742 1482 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 SCAF11Q99590 1463 aaKnown RBP3.29□□□□□ -1.88
USH2A-204ENST00000481786 TCRBV5S4A2TA0A5A2 114 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 ARVCFO00192 962 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 PPFIA2O75334 1257 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 LTFP02788 710 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 KCNA6P17658 529 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 EPHA5P54756 1037 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 GUCY1A3Q02108 690 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 GRIN1Q05586 938 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 NFATC3Q12968 1075 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 PAK1Q13153 545 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 TUSC3Q13454 348 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 PHF19Q5T6S3 580 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 PROSER1Q86XN7 944 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 SH3RF2Q8TEC5 729 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 THAP3Q8WTV1 239 aaPredicted RBP3.29□□□□□ -1.88
USH2A-204ENST00000481786 LRRC37BQ96QE4 947 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 MMRN2Q9H8L6 949 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 RBPJLQ9UBG7 517 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 DSEQ9UL01 958 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 CDK11AQ9UQ88 783 aaPredicted RBP3.29□□□□□ -1.88
USH2A-204ENST00000481786 DMRT1Q9Y5R6 373 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 SHPRHQ149N8 1683 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 CTTNBP2Q8WZ74 1663 aa3.29□□□□□ -1.88
USH2A-204ENST00000481786 PRDM15P57071 1507 aaPredicted RBP3.29□□□□□ -1.88
USH2A-204ENST00000481786 A2MP01023 1474 aa3.28□□□□□ -1.88
USH2A-204ENST00000481786 NINLQ9Y2I6 1382 aa3.28□□□□□ -1.88
USH2A-204ENST00000481786 ZC3H13Q5T200 1668 aaKnown RBP3.28□□□□□ -1.88
USH2A-204ENST00000481786 ITSN2Q9NZM3 1697 aa3.28□□□□□ -1.88
USH2A-204ENST00000481786 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.28□□□□□ -1.88
USH2A-204ENST00000481786 KRTAP29-1A8MX34 341 aaPredicted RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms