RNA–Protein interactions for RNA: ENST00000481786.1

USH2A-204, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-204ENST00000481786 AEBP2Q6ZN18 517 aaPredicted RBP18.02■□□□□ 0.48
USH2A-204ENST00000481786 CHIC1Q5VXU3 224 aa16.64■□□□□ 0.25
USH2A-204ENST00000481786 SENP3Q9H4L4 574 aaPredicted RBP15.25■□□□□ 0.03
USH2A-204ENST00000481786 PHF23Q9BUL5 403 aaPredicted RBP15.09■□□□□ 0.01
USH2A-204ENST00000481786 FOXD1Q16676 465 aa14.39□□□□□ -0.11
USH2A-204ENST00000481786 POTEDQ86YR6 584 aa13.9□□□□□ -0.18
USH2A-204ENST00000481786 MSH5O43196 834 aa13.45□□□□□ -0.26
USH2A-204ENST00000481786 PIAS4Q8N2W9 510 aaPredicted RBP13.31□□□□□ -0.28
USH2A-204ENST00000481786 PPP6R1Q9UPN7 881 aa13.24□□□□□ -0.29
USH2A-204ENST00000481786 ADRA2BP18089 450 aa13.15□□□□□ -0.3
USH2A-204ENST00000481786 PLPPR3Q6T4P5 718 aa13.07□□□□□ -0.32
USH2A-204ENST00000481786 MAPK8IP2Q13387 824 aaPredicted RBP12.23□□□□□ -0.45
USH2A-204ENST00000481786 DMRT2Q9Y5R5 561 aa12.08□□□□□ -0.48
USH2A-204ENST00000481786 CACNB1Q02641 598 aaPredicted RBP11.84□□□□□ -0.51
USH2A-204ENST00000481786 SCAF1Q9H7N4 1312 aaKnown RBP11.83□□□□□ -0.52
USH2A-204ENST00000481786 DCAF8L1A6NGE4 600 aa11.65□□□□□ -0.54
USH2A-204ENST00000481786 RNF39Q9H2S5 420 aa11.52□□□□□ -0.57
USH2A-204ENST00000481786 HOXD11P31277 338 aaPredicted RBP11.48□□□□□ -0.57
USH2A-204ENST00000481786 PPP4R3CPQ6ZMV5 832 aa11.48□□□□□ -0.57
USH2A-204ENST00000481786 CNKSR2Q8WXI2 1034 aa11.29□□□□□ -0.6
USH2A-204ENST00000481786 RNF216Q9NWF9 866 aaPredicted RBP11.27□□□□□ -0.61
USH2A-204ENST00000481786 C1QBPQ07021 282 aaKnown RBP11.26□□□□□ -0.61
USH2A-204ENST00000481786 DNAJC5BQ9UF47 199 aa11.03□□□□□ -0.64
USH2A-204ENST00000481786 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.94□□□□□ -0.66
USH2A-204ENST00000481786 NCBP3Q53F19 620 aaKnown RBP10.8□□□□□ -0.68
USH2A-204ENST00000481786 NPM3O75607 178 aaKnown RBP10.79□□□□□ -0.68
USH2A-204ENST00000481786 POTEHQ6S545 545 aa10.78□□□□□ -0.68
USH2A-204ENST00000481786 SPINK5Q9NQ38 1064 aaPredicted RBP10.73□□□□□ -0.69
USH2A-204ENST00000481786 U3KPZ7 1027 aaPredicted RBP10.73□□□□□ -0.69
USH2A-204ENST00000481786 DSG3P32926 999 aa10.69□□□□□ -0.7
USH2A-204ENST00000481786 CAPN15O75808 1086 aa10.65□□□□□ -0.7
USH2A-204ENST00000481786 ABCB7O75027 752 aa10.46□□□□□ -0.73
USH2A-204ENST00000481786 SLC4A2P04920 1241 aa10.44□□□□□ -0.74
USH2A-204ENST00000481786 TRHP20396 242 aaPredicted RBP10.42□□□□□ -0.74
USH2A-204ENST00000481786 KCNA4P22459 653 aa10.3□□□□□ -0.76
USH2A-204ENST00000481786 ZNF219Q9P2Y4 722 aaPredicted RBP10.26□□□□□ -0.77
USH2A-204ENST00000481786 APLP2Q06481 763 aa10.17□□□□□ -0.78
USH2A-204ENST00000481786 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.11□□□□□ -0.79
USH2A-204ENST00000481786 HNRNPUL2Q1KMD3 747 aaKnown RBP10.11□□□□□ -0.79
USH2A-204ENST00000481786 CHRDL2Q6WN34 429 aa10.1□□□□□ -0.79
USH2A-204ENST00000481786 SAMD1Q6SPF0 538 aaPredicted RBP10.08□□□□□ -0.8
USH2A-204ENST00000481786 RBM42Q9BTD8 480 aaKnown RBP10.07□□□□□ -0.8
USH2A-204ENST00000481786 POLA2Q14181 598 aa10.05□□□□□ -0.8
USH2A-204ENST00000481786 SP7Q8TDD2 431 aaPredicted RBP9.92□□□□□ -0.82
USH2A-204ENST00000481786 MYCNP04198 464 aaPredicted RBP9.9□□□□□ -0.82
USH2A-204ENST00000481786 ATF5Q9Y2D1 282 aaPredicted RBP9.88□□□□□ -0.83
USH2A-204ENST00000481786 PIP4P2Q8N4L2 257 aa9.82□□□□□ -0.84
USH2A-204ENST00000481786 AKT1S1Q96B36 256 aa9.81□□□□□ -0.84
USH2A-204ENST00000481786 REM2Q8IYK8 340 aaPredicted RBP9.8□□□□□ -0.84
USH2A-204ENST00000481786 OSCARQ8IYS5 282 aa9.76□□□□□ -0.85
USH2A-204ENST00000481786 HAX1O00165 279 aa9.73□□□□□ -0.85
USH2A-204ENST00000481786 PITPNM1O00562 1244 aa9.72□□□□□ -0.85
USH2A-204ENST00000481786 EVX2Q03828 476 aa9.71□□□□□ -0.86
USH2A-204ENST00000481786 FXR2P51116 673 aaKnown RBP eCLIP9.67□□□□□ -0.86
USH2A-204ENST00000481786 ZBTB12Q9Y330 459 aaPredicted RBP9.65□□□□□ -0.86
USH2A-204ENST00000481786 FOXD4L1Q9NU39 408 aa9.62□□□□□ -0.87
USH2A-204ENST00000481786 SLC4A1APQ9BWU0 796 aaKnown RBP9.58□□□□□ -0.88
USH2A-204ENST00000481786 ZBTB22O15209 634 aa9.51□□□□□ -0.89
USH2A-204ENST00000481786 PRKAR2AP13861 404 aaKnown RBP9.45□□□□□ -0.9
USH2A-204ENST00000481786 CLEC11AQ9Y240 323 aa9.41□□□□□ -0.9
USH2A-204ENST00000481786 SPDYE2BA6NHP3 402 aa9.39□□□□□ -0.91
USH2A-204ENST00000481786 SPDYE6P0CI01 402 aa9.39□□□□□ -0.91
USH2A-204ENST00000481786 SPDYE2Q495Y8 402 aa9.39□□□□□ -0.91
USH2A-204ENST00000481786 C19orf67A6NJJ6 358 aa9.37□□□□□ -0.91
USH2A-204ENST00000481786 GABBR2O75899 941 aa9.36□□□□□ -0.91
USH2A-204ENST00000481786 MKRN4PQ13434 485 aaPredicted RBP9.36□□□□□ -0.91
USH2A-204ENST00000481786 CHADLQ6NUI6 762 aa9.34□□□□□ -0.91
USH2A-204ENST00000481786 LHX8Q68G74 356 aa9.32□□□□□ -0.92
USH2A-204ENST00000481786 SPDYE1Q8NFV5 336 aaPredicted RBP9.32□□□□□ -0.92
USH2A-204ENST00000481786 FBLN2P98095 1184 aa9.31□□□□□ -0.92
USH2A-204ENST00000481786 ATXN8OSP0DMR3 200 aa9.29□□□□□ -0.92
USH2A-204ENST00000481786 ZNF692Q9BU19 519 aaPredicted RBP9.28□□□□□ -0.92
USH2A-204ENST00000481786 SSUH2Q9Y2M2 353 aa9.27□□□□□ -0.93
USH2A-204ENST00000481786 POTEIP0CG38 1075 aa9.22□□□□□ -0.93
USH2A-204ENST00000481786 PRR29P0C7W0 189 aa9.15□□□□□ -0.94
USH2A-204ENST00000481786 PABPN1Q86U42 306 aaKnown RBP eCLIP9.15□□□□□ -0.94
USH2A-204ENST00000481786 CD44P16070 742 aaKnown RBP9.11□□□□□ -0.95
USH2A-204ENST00000481786 PLSCR2Q9NRY7 297 aa9.07□□□□□ -0.96
USH2A-204ENST00000481786 FARP1Q9Y4F1 1045 aaPredicted RBP9.07□□□□□ -0.96
USH2A-204ENST00000481786 DCBLD2Q96PD2 775 aa8.97□□□□□ -0.97
USH2A-204ENST00000481786 POTEB2H3BUK9 544 aa8.94□□□□□ -0.98
USH2A-204ENST00000481786 ZRANB1Q9UGI0 708 aa8.94□□□□□ -0.98
USH2A-204ENST00000481786 GALR2O43603 387 aaPredicted RBP8.93□□□□□ -0.98
USH2A-204ENST00000481786 ZNF579Q8NAF0 562 aaKnown RBP8.92□□□□□ -0.98
USH2A-204ENST00000481786 OTUD5Q96G74 571 aa8.92□□□□□ -0.98
USH2A-204ENST00000481786 CREBZFQ9NS37 354 aa8.9□□□□□ -0.98
USH2A-204ENST00000481786 CLCN6P51797 869 aa8.87□□□□□ -0.99
USH2A-204ENST00000481786 PHF12Q96QT6 1004 aa8.84□□□□□ -0.99
USH2A-204ENST00000481786 PELP1Q8IZL8 1130 aaKnown RBP8.83□□□□□ -1
USH2A-204ENST00000481786 POTEMA6NI47 508 aa8.8□□□□□ -1
USH2A-204ENST00000481786 POTEGQ6S5H5 508 aa8.77□□□□□ -1.01
USH2A-204ENST00000481786 POTEJP0CG39 1038 aa8.75□□□□□ -1.01
USH2A-204ENST00000481786 MNX1P50219 401 aaPredicted RBP8.72□□□□□ -1.01
USH2A-204ENST00000481786 CSRNP3Q8WYN3 585 aa8.7□□□□□ -1.02
USH2A-204ENST00000481786 STAG3Q9UJ98 1225 aa8.69□□□□□ -1.02
USH2A-204ENST00000481786 MS4A3Q96HJ5 214 aa8.68□□□□□ -1.02
USH2A-204ENST00000481786 PAK3O75914 559 aaPredicted RBP8.67□□□□□ -1.02
USH2A-204ENST00000481786 LCE2DQ5TA82 110 aaPredicted RBP8.67□□□□□ -1.02
USH2A-204ENST00000481786 METRNQ9UJH8 293 aa8.67□□□□□ -1.02
USH2A-204ENST00000481786 SPDYE4A6NLX3 237 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms