RNA–Protein interactions for RNA: ENST00000476597.1

SEC13-214, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 614 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-214ENST00000476597 RGS18Q9NS28 235 aa12.17□□□□□ -0.46
SEC13-214ENST00000476597 ORC3Q9UBD5 711 aaPredicted RBP12.17□□□□□ -0.46
SEC13-214ENST00000476597 DDX25Q9UHL0 483 aaKnown RBP12.17□□□□□ -0.46
SEC13-214ENST00000476597 COL4A6Q14031 1691 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 CCDC194A0A1B0GVG4 234 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 SLC37A4O43826 429 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 CTNNB1P35222 781 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 CLCN3P51790 818 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 NLRP11P59045 1033 aaKnown RBP12.16□□□□□ -0.46
SEC13-214ENST00000476597 FAM189BP81408 668 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 LETM2Q2VYF4 491 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 XKR3Q5GH77 459 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 SLC24A5Q71RS6 500 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 NEK8Q86SG6 692 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 FAM228AQ86W67 206 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 CMTR2Q8IYT2 770 aaKnown RBP12.16□□□□□ -0.46
SEC13-214ENST00000476597 LRRC71Q8N4P6 559 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 NECAB1Q8N987 351 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 BANK1Q8NDB2 785 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 GTF3C6Q969F1 213 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 FAM20AQ96MK3 541 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 CEP89Q96ST8 783 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 PPP1R16BQ96T49 567 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 ADAM2Q99965 735 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 C11orf84Q9BUA3 381 aaPredicted RBP12.16□□□□□ -0.46
SEC13-214ENST00000476597 PLVAPQ9BX97 442 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 LMAN2LQ9H0V9 348 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 UBE2ZQ9H832 354 aaPredicted RBP12.16□□□□□ -0.46
SEC13-214ENST00000476597 KCNMB3Q9NPA1 279 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 C1orf112Q9NSG2 853 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 PCDHB7Q9Y5E2 793 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 MICAL3Q7RTP6 2002 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 KAT6AQ92794 2004 aa12.16□□□□□ -0.46
SEC13-214ENST00000476597 DENND3A2RUS2 1198 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 C9IYK1 514 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 EML1O00423 815 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 TBX3O15119 743 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 GRM6O15303 877 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 LARGE1O95461 756 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 CENPBP07199 599 aaPredicted RBP12.15□□□□□ -0.46
SEC13-214ENST00000476597 GCFC2P16383 781 aaKnown RBP12.15□□□□□ -0.46
SEC13-214ENST00000476597 EIF4BP23588 611 aaKnown RBP12.15□□□□□ -0.46
SEC13-214ENST00000476597 NEK4P51957 841 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 DSC3Q14574 896 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 TIGD5Q53EQ6 642 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 NAALADL2Q58DX5 795 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 EARS2Q5JPH6 523 aaKnown RBP12.15□□□□□ -0.46
SEC13-214ENST00000476597 PIK3AP1Q6ZUJ8 805 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 NECAB3Q96P71 396 aaPredicted RBP12.15□□□□□ -0.46
SEC13-214ENST00000476597 MAP7D2Q96T17 732 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 NSUN3Q9H649 340 aaKnown RBP12.15□□□□□ -0.46
SEC13-214ENST00000476597 RNF216Q9NWF9 866 aaPredicted RBP12.15□□□□□ -0.46
SEC13-214ENST00000476597 LRFN2Q9ULH4 789 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 PLAGL2Q9UPG8 496 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 AKT3Q9Y243 479 aa12.15□□□□□ -0.46
SEC13-214ENST00000476597 MRPL42Q9Y6G3 142 aaKnown RBP12.15□□□□□ -0.46
SEC13-214ENST00000476597 IGKV6-21A0A0C4DH24 114 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 DDX11L8A8MPP1 907 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 CCNT1O60563 726 aaKnown RBP12.14□□□□□ -0.47
SEC13-214ENST00000476597 GATMP50440 423 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 GPC3P51654 580 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 PSMC5P62195 406 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 CDC42EP1Q00587 391 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 TBC1D8BQ0IIM8 1120 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 PPP2R5CQ13362 524 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 CAMK1Q14012 370 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 COL19A1Q14993 1142 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 LEXMQ3ZCV2 418 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 TCEAL5Q5H9L2 206 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 FAM102BQ5T8I3 360 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 NSUN7Q8NE18 718 aaKnown RBP12.14□□□□□ -0.47
SEC13-214ENST00000476597 HAS1Q92839 578 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 TNFRSF25Q93038 417 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 P2RX5Q93086 422 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 NAP1L4Q99733 375 aaKnown RBP12.14□□□□□ -0.47
SEC13-214ENST00000476597 ELAC1Q9H777 363 aaKnown RBP12.14□□□□□ -0.47
SEC13-214ENST00000476597 ALG13Q9NP73 1137 aaKnown RBP12.14□□□□□ -0.47
SEC13-214ENST00000476597 VAV3Q9UKW4 847 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 TTC3P53804 2025 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 BRWD1Q9NSI6 2320 aa12.14□□□□□ -0.47
SEC13-214ENST00000476597 TMEM150BA6NC51 233 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 NCK2O43639 380 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 MAFO75444 373 aaPredicted RBP12.13□□□□□ -0.47
SEC13-214ENST00000476597 P4HBP07237 508 aaKnown RBP12.13□□□□□ -0.47
SEC13-214ENST00000476597 DARSP14868 501 aaKnown RBP12.13□□□□□ -0.47
SEC13-214ENST00000476597 KCNA5P22460 613 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 KRT2P35908 639 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 QARSP47897 775 aaKnown RBP12.13□□□□□ -0.47
SEC13-214ENST00000476597 NR5A1Q13285 461 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 DRP2Q13474 957 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 MTERF2Q49AM1 385 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 PAN2Q504Q3 1202 aaKnown RBP12.13□□□□□ -0.47
SEC13-214ENST00000476597 ANO5Q75V66 913 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.13□□□□□ -0.47
SEC13-214ENST00000476597 SPPL3Q8TCT6 385 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 NEK9Q8TD19 979 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 ZNF668Q96K58 619 aaPredicted RBP12.13□□□□□ -0.47
SEC13-214ENST00000476597 SH2D3AQ9BRG2 576 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 TMEM161AQ9NX61 479 aa12.13□□□□□ -0.47
SEC13-214ENST00000476597 SEPT9Q9UHD8 586 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms