RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 RIT2Q99578 217 aa17.03■□□□□ 0.32
VARS-223ENST00000474643 OSMRQ99650 979 aa17.03■□□□□ 0.32
VARS-223ENST00000474643 ADAM2Q99965 735 aa17.03■□□□□ 0.32
VARS-223ENST00000474643 C1QTNF1Q9BXJ1 281 aa17.03■□□□□ 0.32
VARS-223ENST00000474643 C1orf112Q9NSG2 853 aa17.03■□□□□ 0.32
VARS-223ENST00000474643 CLDND1Q9NY35 253 aa17.03■□□□□ 0.32
VARS-223ENST00000474643 ST3GAL5Q9UNP4 418 aa17.03■□□□□ 0.32
VARS-223ENST00000474643 NOC2LQ9Y3T9 749 aaKnown RBP17.03■□□□□ 0.32
VARS-223ENST00000474643 MAFBQ9Y5Q3 323 aaPredicted RBP17.03■□□□□ 0.32
VARS-223ENST00000474643 RALGAPA2Q2PPJ7 1873 aa17.03■□□□□ 0.32
VARS-223ENST00000474643 CCDC194A0A1B0GVG4 234 aa17.02■□□□□ 0.32
VARS-223ENST00000474643 MSH4O15457 936 aa17.02■□□□□ 0.32
VARS-223ENST00000474643 NCK2O43639 380 aa17.02■□□□□ 0.32
VARS-223ENST00000474643 C22orf31O95567 290 aa17.02■□□□□ 0.32
VARS-223ENST00000474643 MCM2P49736 904 aa17.02■□□□□ 0.32
VARS-223ENST00000474643 CLCN3P51790 818 aa17.02■□□□□ 0.32
VARS-223ENST00000474643 TBC1D8BQ0IIM8 1120 aa17.02■□□□□ 0.32
VARS-223ENST00000474643 NONOQ15233 471 aaKnown RBP eCLIP17.02■□□□□ 0.32
VARS-223ENST00000474643 PUS10Q3MIT2 529 aaKnown RBP17.02■□□□□ 0.32
VARS-223ENST00000474643 FAM43BQ6ZT52 329 aaPredicted RBP17.02■□□□□ 0.32
VARS-223ENST00000474643 LINC01599Q8WXQ3 324 aa17.02■□□□□ 0.32
VARS-223ENST00000474643 CLP1Q92989 425 aaKnown RBP17.02■□□□□ 0.32
VARS-223ENST00000474643 LLPHQ9BRT6 129 aaKnown RBP17.02■□□□□ 0.32
VARS-223ENST00000474643 PHF20Q9BVI0 1012 aa17.02■□□□□ 0.32
VARS-223ENST00000474643 AAASQ9NRG9 546 aa17.02■□□□□ 0.32
VARS-223ENST00000474643 SEPT9Q9UHD8 586 aaPredicted RBP17.02■□□□□ 0.32
VARS-223ENST00000474643 MRPL42Q9Y6G3 142 aaKnown RBP17.02■□□□□ 0.32
VARS-223ENST00000474643 C5orf67F2Z3F1 127 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 H3BQ06 376 aaPredicted RBP17.01■□□□□ 0.31
VARS-223ENST00000474643 GRM6O15303 877 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 FDPSP14324 419 aaKnown RBP17.01■□□□□ 0.31
VARS-223ENST00000474643 ZSCAN20P17040 1043 aaPredicted RBP17.01■□□□□ 0.31
VARS-223ENST00000474643 LEXMQ3ZCV2 418 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 EFCAB12Q6NXP0 572 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 SLC24A5Q71RS6 500 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 KRT25Q7Z3Z0 450 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 ABI1Q8IZP0 508 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 LRRC71Q8N4P6 559 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 DAGLBQ8NCG7 672 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 ZNF689Q96CS4 500 aaPredicted RBP17.01■□□□□ 0.31
VARS-223ENST00000474643 UNC45AQ9H3U1 944 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 IGFLR1Q9H665 355 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 ATP6V0A4Q9HBG4 840 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 ERVK-5Q9HDB9 667 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 ALG13Q9NP73 1137 aaKnown RBP17.01■□□□□ 0.31
VARS-223ENST00000474643 GJB4Q9NTQ9 266 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 DDX25Q9UHL0 483 aaKnown RBP17.01■□□□□ 0.31
VARS-223ENST00000474643 PCDHB12Q9Y5F1 795 aa17.01■□□□□ 0.31
VARS-223ENST00000474643 TBKBP1A7MCY6 615 aa17■□□□□ 0.31
VARS-223ENST00000474643 TDP2O95551 362 aa17■□□□□ 0.31
VARS-223ENST00000474643 ATP4AP20648 1035 aa17■□□□□ 0.31
VARS-223ENST00000474643 KRT2P35908 639 aa17■□□□□ 0.31
VARS-223ENST00000474643 DNM2P50570 870 aa17■□□□□ 0.31
VARS-223ENST00000474643 NLRP11P59045 1033 aaKnown RBP17■□□□□ 0.31
VARS-223ENST00000474643 HMGN5P82970 282 aaKnown RBP17■□□□□ 0.31
VARS-223ENST00000474643 ST3GAL1Q11201 340 aa17■□□□□ 0.31
VARS-223ENST00000474643 LETM2Q2VYF4 491 aa17■□□□□ 0.31
VARS-223ENST00000474643 NAALADL2Q58DX5 795 aa17■□□□□ 0.31
VARS-223ENST00000474643 ZNF710Q8N1W2 664 aa17■□□□□ 0.31
VARS-223ENST00000474643 RDM1Q8NG50 284 aa17■□□□□ 0.31
VARS-223ENST00000474643 NLRP7Q8WX94 980 aa17■□□□□ 0.31
VARS-223ENST00000474643 SLC5A5Q92911 643 aa17■□□□□ 0.31
VARS-223ENST00000474643 LENG9Q96B70 501 aa17■□□□□ 0.31
VARS-223ENST00000474643 PABPC5Q96DU9 382 aaKnown RBP17■□□□□ 0.31
VARS-223ENST00000474643 TMX1Q9H3N1 280 aa17■□□□□ 0.31
VARS-223ENST00000474643 MYH9P35579 1960 aaKnown RBP17■□□□□ 0.31
VARS-223ENST00000474643 BDP1A6H8Y1 2624 aa17■□□□□ 0.31
VARS-223ENST00000474643 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.99■□□□□ 0.31
VARS-223ENST00000474643 ZBTB42B2RXF5 422 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 MMP1P03956 469 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 GATMP50440 423 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 SAFBQ15424 915 aaKnown RBP eCLIP16.99■□□□□ 0.31
VARS-223ENST00000474643 Q4G0T1 1027 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 RTN4RL1Q86UN2 441 aaPredicted RBP16.99■□□□□ 0.31
VARS-223ENST00000474643 RNF169Q8NCN4 708 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 MICAL1Q8TDZ2 1067 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 TMEM40Q8WWA1 233 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 P2RX5Q93086 422 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 C8orf76Q96K31 380 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 CDHR5Q9HBB8 845 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 RC3H2Q9HBD1 1191 aaKnown RBP16.99■□□□□ 0.31
VARS-223ENST00000474643 RGS18Q9NS28 235 aa16.99■□□□□ 0.31
VARS-223ENST00000474643 TTC3P53804 2025 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 HOXA2O43364 376 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 COL9A1P20849 921 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 NDUFV1P49821 464 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 GUCY1B3Q02153 619 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 INF2Q27J81 1249 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 MTERF2Q49AM1 385 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 PIK3AP1Q6ZUJ8 805 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 FAM228AQ86W67 206 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 THNSL1Q8IYQ7 743 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 GJA10Q969M2 543 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 TMX3Q96JJ7 454 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 ZNF668Q96K58 619 aaPredicted RBP16.98■□□□□ 0.31
VARS-223ENST00000474643 PLAGL2Q9UPG8 496 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 KIF3AQ9Y496 699 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 NCOR1O75376 2440 aa16.98■□□□□ 0.31
VARS-223ENST00000474643 CCNT1O60563 726 aaKnown RBP16.97■□□□□ 0.31
VARS-223ENST00000474643 DKC1O60832 514 aaKnown RBP eCLIP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms