RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 ARHGEF16Q5VV41 709 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 SNRNP48Q6IEG0 339 aaKnown RBP10.77□□□□□ -0.69
USP39-214ENST00000474572 PADI6Q6TGC4 694 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 RBM46Q8TBY0 533 aaKnown RBP10.77□□□□□ -0.69
USP39-214ENST00000474572 AGPAT3Q9NRZ7 376 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 HOMER2Q9NSB8 354 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 PCDHA13Q9Y5I0 950 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 SNCAIPQ9Y6H5 919 aa10.77□□□□□ -0.69
USP39-214ENST00000474572 MAPK13O15264 365 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 USO1O60763 962 aaKnown RBP10.76□□□□□ -0.69
USP39-214ENST00000474572 NR3C2P08235 984 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 PLS3P13797 630 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 KCNA2P16389 499 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 ERCC3P19447 782 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 PON1P27169 355 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 ANXA13P27216 316 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 NCKAP1LP55160 1127 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 JAM2P57087 298 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 SNRPFP62306 86 aaKnown RBP10.76□□□□□ -0.69
USP39-214ENST00000474572 UGCGQ16739 394 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 EXOC3L4Q17RC7 722 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 ODR4Q5SWX8 454 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 KLHDC7AQ5VTJ3 777 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 PRAMEF18Q5VWM3 479 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 NSMFQ6X4W1 530 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 GBP6Q6ZN66 633 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 NLRX1Q86UT6 975 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 FAM186BQ8IYM0 893 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 TXLNBQ8N3L3 684 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 MSANTD4Q8NCY6 345 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 KCNN1Q92952 543 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 HVCN1Q96D96 273 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 TEX13BQ9BXU2 312 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 GBP3Q9H0R5 595 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 TMEM206Q9H813 350 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 ACAD9Q9H845 621 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 NLRC4Q9NPP4 1024 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 ADARB2Q9NS39 739 aaKnown RBP10.76□□□□□ -0.69
USP39-214ENST00000474572 CYP39A1Q9NYL5 469 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 TMOD4Q9NZQ9 345 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 LARSQ9P2J5 1176 aaKnown RBP10.76□□□□□ -0.69
USP39-214ENST00000474572 DDX41Q9UJV9 622 aaKnown RBP10.76□□□□□ -0.69
USP39-214ENST00000474572 NENFQ9UMX5 172 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 TFR2Q9UP52 801 aa10.76□□□□□ -0.69
USP39-214ENST00000474572 BTNL10A8MVZ5 291 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 CLIC2O15247 247 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 AKR1B10O60218 316 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 RGS20O76081 388 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 STBD1O95210 358 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 ZRANB2O95218 330 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP39-214ENST00000474572 ATP1A1P05023 1023 aaKnown RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 MYCLP12524 364 aaPredicted RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 UCHL3P15374 230 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 PRLRP16471 622 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 ZSCAN20P17040 1043 aaPredicted RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 SLC9A1P19634 815 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 YWHABP31946 246 aaKnown RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 CLCN6P51797 869 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 CHMP4BP1P59074 171 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 GTF2BQ00403 316 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 CYP27A1Q02318 531 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 SLC18A3Q16572 532 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 LBX2Q6XYB7 198 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP39-214ENST00000474572 HS2ST1Q7LGA3 356 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 IRF2BP2Q7Z5L9 587 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 SMAP1Q8IYB5 467 aaPredicted RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 SLC17A8Q8NDX2 589 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 CHST13Q8NET6 341 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 TRIM58Q8NG06 486 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 NSUN6Q8TEA1 469 aaKnown RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 UPF1Q92900 1129 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP39-214ENST00000474572 SECISBP2LQ93073 1101 aaKnown RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 CDHR1Q96JP9 859 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 DRC1Q96MC2 740 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 CRACR2AQ9BSW2 395 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 MOV10L1Q9BXT6 1211 aaKnown RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 IFIH1Q9BYX4 1025 aaKnown RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 IKZF4Q9H2S9 585 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 DEF6Q9H4E7 631 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 POLD4Q9HCU8 107 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 A1CFQ9NQ94 594 aaKnown RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 ARGLU1Q9NWB6 273 aaPredicted RBP10.75□□□□□ -0.69
USP39-214ENST00000474572 PKD2L1Q9P0L9 805 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 FZD1Q9UP38 647 aa10.75□□□□□ -0.69
USP39-214ENST00000474572 TESPA1A2RU30 521 aaPredicted RBP10.74□□□□□ -0.69
USP39-214ENST00000474572 POTEB2H3BUK9 544 aa10.74□□□□□ -0.69
USP39-214ENST00000474572 K7ENM7 598 aa10.74□□□□□ -0.69
USP39-214ENST00000474572 BACH1O14867 736 aa10.74□□□□□ -0.69
USP39-214ENST00000474572 PMM2O15305 246 aa10.74□□□□□ -0.69
USP39-214ENST00000474572 ATP8B1O43520 1251 aa10.74□□□□□ -0.69
USP39-214ENST00000474572 PPP1R12BO60237 982 aaPredicted RBP10.74□□□□□ -0.69
USP39-214ENST00000474572 DKC1O60832 514 aaKnown RBP eCLIP10.74□□□□□ -0.69
USP39-214ENST00000474572 TACC1O75410 805 aa10.74□□□□□ -0.69
USP39-214ENST00000474572 ICAM3P32942 547 aa10.74□□□□□ -0.69
USP39-214ENST00000474572 MAGEA1P43355 309 aa10.74□□□□□ -0.69
USP39-214ENST00000474572 FMO5P49326 533 aa10.74□□□□□ -0.69
USP39-214ENST00000474572 ASIC2Q16515 512 aa10.74□□□□□ -0.69
USP39-214ENST00000474572 TEX35Q5T0J7 233 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms