RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 CDK5RAP3Q96JB5 506 aa12.9□□□□□ -0.34
SYNE2-207ENST00000458046 ERGIC2Q96RQ1 377 aa12.9□□□□□ -0.34
SYNE2-207ENST00000458046 PSMB7Q99436 277 aa12.9□□□□□ -0.34
SYNE2-207ENST00000458046 NUDT12Q9BQG2 462 aa12.9□□□□□ -0.34
SYNE2-207ENST00000458046 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.9□□□□□ -0.34
SYNE2-207ENST00000458046 NDST4Q9H3R1 872 aa12.9□□□□□ -0.34
SYNE2-207ENST00000458046 ARHGAP20Q9P2F6 1191 aa12.9□□□□□ -0.34
SYNE2-207ENST00000458046 LAMB1P07942 1786 aa12.9□□□□□ -0.34
SYNE2-207ENST00000458046 ATP9BO43861 1147 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 NBNO60934 754 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 MYBL2P10244 700 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 VAV2P52735 878 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 FXNQ16595 210 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 IL31Q6EBC2 164 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 CENPPQ6IPU0 288 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 ANKRD13CQ8N6S4 541 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 PPHLN1Q8NEY8 458 aaKnown RBP12.89□□□□□ -0.35
SYNE2-207ENST00000458046 GOLGA5Q8TBA6 731 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 GJA10Q969M2 543 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 L3MBTL3Q96JM7 780 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-207ENST00000458046 PNMA5Q96PV4 448 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 METTL5Q9NRN9 209 aaKnown RBP12.89□□□□□ -0.35
SYNE2-207ENST00000458046 CCNL1Q9UK58 526 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-207ENST00000458046 WNK3Q9BYP7 1800 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 SNX2O60749 519 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 MOCS3O95396 460 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 EIF4A3P38919 411 aaKnown RBP12.89□□□□□ -0.35
SYNE2-207ENST00000458046 MATR3P43243 847 aaKnown RBP eCLIP12.89□□□□□ -0.35
SYNE2-207ENST00000458046 CKAP4Q07065 602 aaKnown RBP12.89□□□□□ -0.35
SYNE2-207ENST00000458046 MUM1L1Q5H9M0 696 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 LVRNQ6Q4G3 990 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 RRAGAQ7L523 313 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 RASSF3Q86WH2 238 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 CLEC10AQ8IUN9 316 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 LRRC47Q8N1G4 583 aaKnown RBP12.89□□□□□ -0.35
SYNE2-207ENST00000458046 CCDC155Q8N6L0 562 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 FAM71BQ8TC56 605 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 IFIH1Q9BYX4 1025 aaKnown RBP12.89□□□□□ -0.35
SYNE2-207ENST00000458046 DHX36Q9H2U1 1008 aaKnown RBP12.89□□□□□ -0.35
SYNE2-207ENST00000458046 DEF6Q9H4E7 631 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 FAM204AQ9H8W3 233 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 CD209Q9NNX6 404 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 PRM3Q9NNZ6 103 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 SAGE1Q9NXZ1 904 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 IPPQ9Y573 584 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 PCDHA13Q9Y5I0 950 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 CAPN6Q9Y6Q1 641 aa12.89□□□□□ -0.35
SYNE2-207ENST00000458046 IL4RP24394 825 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 CXCR5P32302 372 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 RFC4P35249 363 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 RAB27AP51159 221 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 NEK3P51956 506 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 LEKR1Q6ZMV7 388 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 LARP4BQ92615 738 aaKnown RBP12.88□□□□□ -0.35
SYNE2-207ENST00000458046 MPP4Q96JB8 637 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 MTMR9Q96QG7 549 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 ABCG4Q9H172 646 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 LCMT1Q9UIC8 334 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 PLAGL2Q9UPG8 496 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 CEP350Q5VT06 3117 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 A0A1W2PQJ5 194 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 TULP2O00295 520 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 RNF40O75150 1001 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 UFL1O94874 794 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 SYF2O95926 243 aaKnown RBP12.88□□□□□ -0.35
SYNE2-207ENST00000458046 ABCD1P33897 745 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 PICALMQ13492 652 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 FOXR1Q6PIV2 292 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 KCNK18Q7Z418 384 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 KIAA0907Q7Z7F0 614 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-207ENST00000458046 COG1Q8WTW3 980 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 CLP1Q92989 425 aaKnown RBP12.88□□□□□ -0.35
SYNE2-207ENST00000458046 SNTG2Q9NY99 539 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 SMARCAL1Q9NZC9 954 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 SIK3Q9Y2K2 1263 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 CD2APQ9Y5K6 639 aa12.88□□□□□ -0.35
SYNE2-207ENST00000458046 SNED1Q8TER0 1413 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 GPR75-ASB3A0A0A6YYF3 556 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 LRRC53A6NM62 1247 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 EDIL3O43854 480 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 AKR1B10O60218 316 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 USO1O60763 962 aaKnown RBP12.87□□□□□ -0.35
SYNE2-207ENST00000458046 BAIAP3O94812 1187 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 ENPP1P22413 925 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 NT5C2P49902 561 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 KIF11P52732 1056 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 FIGNQ5HY92 759 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 UNC13DQ70J99 1090 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 SNX29Q8TEQ0 813 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 HDAC7Q8WUI4 952 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 PURBQ96QR8 312 aaKnown RBP12.87□□□□□ -0.35
SYNE2-207ENST00000458046 ZNF700Q9H0M5 742 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 DCAF16Q9NXF7 216 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 HPCAL4Q9UM19 191 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 PDHBP11177 359 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 SERPINB3P29508 390 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 PPP1R2P41236 205 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 UBE2SQ16763 222 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 SKIDA1Q1XH10 827 aa12.87□□□□□ -0.35
SYNE2-207ENST00000458046 MFSD14BQ5SR56 506 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms