RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 GJA10Q969M2 543 aa20.09■□□□□ 0.81
MSH6-207ENST00000456246 ZNF689Q96CS4 500 aaPredicted RBP20.09■□□□□ 0.81
MSH6-207ENST00000456246 MRPL38Q96DV4 380 aaKnown RBP20.09■□□□□ 0.81
MSH6-207ENST00000456246 NIFKQ9BYG3 293 aaKnown RBP20.09■□□□□ 0.81
MSH6-207ENST00000456246 GJB4Q9NTQ9 266 aa20.09■□□□□ 0.81
MSH6-207ENST00000456246 SEPT9Q9UHD8 586 aaPredicted RBP20.09■□□□□ 0.81
MSH6-207ENST00000456246 NOC2LQ9Y3T9 749 aaKnown RBP20.09■□□□□ 0.81
MSH6-207ENST00000456246 VCANP13611 3396 aa20.09■□□□□ 0.81
MSH6-207ENST00000456246 NLRC5Q86WI3 1866 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 C5orf67F2Z3F1 127 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 H3BNC9 293 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 MARCH6O60337 910 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 GPR32O75388 356 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 BAG4O95429 457 aaKnown RBP20.08■□□□□ 0.81
MSH6-207ENST00000456246 MMP1P03956 469 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 VTNP04004 478 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 SARSP49591 514 aaKnown RBP20.08■□□□□ 0.81
MSH6-207ENST00000456246 CLCN3P51790 818 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 BTG3Q14201 252 aaPredicted RBP20.08■□□□□ 0.81
MSH6-207ENST00000456246 TMEM266Q2M3C6 531 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 TIGD5Q53EQ6 642 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 KRT40Q6A162 431 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 RTN4RL1Q86UN2 441 aaPredicted RBP20.08■□□□□ 0.81
MSH6-207ENST00000456246 CMTR2Q8IYT2 770 aaKnown RBP20.08■□□□□ 0.81
MSH6-207ENST00000456246 CLP1Q92989 425 aaKnown RBP20.08■□□□□ 0.81
MSH6-207ENST00000456246 OSMRQ99650 979 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 JPH2Q9BR39 696 aaPredicted RBP20.08■□□□□ 0.81
MSH6-207ENST00000456246 C11orf84Q9BUA3 381 aaPredicted RBP20.08■□□□□ 0.81
MSH6-207ENST00000456246 VAV3Q9UKW4 847 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 LRFN2Q9ULH4 789 aa20.08■□□□□ 0.81
MSH6-207ENST00000456246 DENND3A2RUS2 1198 aa20.07■□□□□ 0.8
MSH6-207ENST00000456246 NR5A1Q13285 461 aa20.07■□□□□ 0.8
MSH6-207ENST00000456246 GPM6BQ13491 265 aa20.07■□□□□ 0.8
MSH6-207ENST00000456246 CRIPAKQ8N1N5 446 aa20.07■□□□□ 0.8
MSH6-207ENST00000456246 TMEM40Q8WWA1 233 aa20.07■□□□□ 0.8
MSH6-207ENST00000456246 TNFRSF25Q93038 417 aa20.07■□□□□ 0.8
MSH6-207ENST00000456246 ZSCAN31Q96LW9 406 aaPredicted RBP20.07■□□□□ 0.8
MSH6-207ENST00000456246 LLPHQ9BRT6 129 aaKnown RBP20.07■□□□□ 0.8
MSH6-207ENST00000456246 TMX1Q9H3N1 280 aa20.07■□□□□ 0.8
MSH6-207ENST00000456246 CDHR5Q9HBB8 845 aa20.07■□□□□ 0.8
MSH6-207ENST00000456246 ST3GAL5Q9UNP4 418 aa20.07■□□□□ 0.8
MSH6-207ENST00000456246 PPME1Q9Y570 386 aa20.07■□□□□ 0.8
MSH6-207ENST00000456246 RBAK-RBAKDNI3L0D1 243 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 JAK2O60674 1132 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 P4HBP07237 508 aaKnown RBP20.06■□□□□ 0.8
MSH6-207ENST00000456246 CTNNB1P35222 781 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 QARSP47897 775 aaKnown RBP20.06■□□□□ 0.8
MSH6-207ENST00000456246 DNM2P50570 870 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 NLRP11P59045 1033 aaKnown RBP20.06■□□□□ 0.8
MSH6-207ENST00000456246 C8orf34Q49A92 452 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 SLC24A5Q71RS6 500 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 FAM228AQ86W67 206 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 DIS3L2Q8IYB7 885 aaKnown RBP20.06■□□□□ 0.8
MSH6-207ENST00000456246 EXOC8Q8IYI6 725 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 LRRC71Q8N4P6 559 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 HLA-CQ95604 372 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 PLVAPQ9BX97 442 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 LMAN2LQ9H0V9 348 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 SH2B1Q9NRF2 756 aaPredicted RBP20.06■□□□□ 0.8
MSH6-207ENST00000456246 RGS18Q9NS28 235 aa20.06■□□□□ 0.8
MSH6-207ENST00000456246 EIF4BP23588 611 aaKnown RBP20.05■□□□□ 0.8
MSH6-207ENST00000456246 BMPR1AP36894 532 aa20.05■□□□□ 0.8
MSH6-207ENST00000456246 SAFBQ15424 915 aaKnown RBP eCLIP20.05■□□□□ 0.8
MSH6-207ENST00000456246 MTERF2Q49AM1 385 aa20.05■□□□□ 0.8
MSH6-207ENST00000456246 POTEDQ86YR6 584 aa20.05■□□□□ 0.8
MSH6-207ENST00000456246 HAS1Q92839 578 aa20.05■□□□□ 0.8
MSH6-207ENST00000456246 SCLT1Q96NL6 688 aa20.05■□□□□ 0.8
MSH6-207ENST00000456246 PPP1R16BQ96T49 567 aa20.05■□□□□ 0.8
MSH6-207ENST00000456246 ADAM2Q99965 735 aa20.05■□□□□ 0.8
MSH6-207ENST00000456246 ADAMTS10Q9H324 1103 aa20.05■□□□□ 0.8
MSH6-207ENST00000456246 PCDHB7Q9Y5E2 793 aa20.05■□□□□ 0.8
MSH6-207ENST00000456246 NCOR1O75376 2440 aa20.05■□□□□ 0.8
MSH6-207ENST00000456246 IGKV6-21A0A0C4DH24 114 aa20.04■□□□□ 0.8
MSH6-207ENST00000456246 DDX11L8A8MPP1 907 aa20.04■□□□□ 0.8
MSH6-207ENST00000456246 STBD1O95210 358 aa20.04■□□□□ 0.8
MSH6-207ENST00000456246 LINC00271P0C7V0 271 aa20.04■□□□□ 0.8
MSH6-207ENST00000456246 GPC3P51654 580 aa20.04■□□□□ 0.8
MSH6-207ENST00000456246 HMGN5P82970 282 aaKnown RBP20.04■□□□□ 0.8
MSH6-207ENST00000456246 EPHA7Q15375 998 aa20.04■□□□□ 0.8
MSH6-207ENST00000456246 NAALADL2Q58DX5 795 aa20.04■□□□□ 0.8
MSH6-207ENST00000456246 EARS2Q5JPH6 523 aaKnown RBP20.04■□□□□ 0.8
MSH6-207ENST00000456246 BANK1Q8NDB2 785 aa20.04■□□□□ 0.8
MSH6-207ENST00000456246 ELAC1Q9H777 363 aaKnown RBP20.04■□□□□ 0.8
MSH6-207ENST00000456246 BRWD1Q9NSI6 2320 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 BTBD18B2RXH4 712 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 C9IYK1 514 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 EML1O00423 815 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 DTNBO60941 627 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 DARSP14868 501 aaKnown RBP20.03■□□□□ 0.8
MSH6-207ENST00000456246 ZSCAN20P17040 1043 aaPredicted RBP20.03■□□□□ 0.8
MSH6-207ENST00000456246 ST3GAL1Q11201 340 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 C4orf19Q8IY42 314 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 NLRP7Q8WX94 980 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 P2RX5Q93086 422 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 CEP89Q96ST8 783 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 TMEM161AQ9NX61 479 aa20.03■□□□□ 0.8
MSH6-207ENST00000456246 HOXA2O43364 376 aa20.02■□□□□ 0.8
MSH6-207ENST00000456246 MGEA5O60502 916 aa20.02■□□□□ 0.8
MSH6-207ENST00000456246 MAFO75444 373 aaPredicted RBP20.02■□□□□ 0.8
MSH6-207ENST00000456246 RBM25P49756 843 aaKnown RBP20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms