RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TBC1D8BQ0IIM8 1120 aa23.86■■□□□ 1.41
HMGB3-205ENST00000455596 EPC2Q52LR7 807 aa23.86■■□□□ 1.41
HMGB3-205ENST00000455596 POTEDQ86YR6 584 aa23.86■■□□□ 1.41
HMGB3-205ENST00000455596 DIS3L2Q8IYB7 885 aaKnown RBP23.86■■□□□ 1.41
HMGB3-205ENST00000455596 LRRC71Q8N4P6 559 aa23.86■■□□□ 1.41
HMGB3-205ENST00000455596 BANK1Q8NDB2 785 aa23.86■■□□□ 1.41
HMGB3-205ENST00000455596 ATXN2LQ8WWM7 1075 aaKnown RBP23.86■■□□□ 1.41
HMGB3-205ENST00000455596 ZSCAN31Q96LW9 406 aaPredicted RBP23.86■■□□□ 1.41
HMGB3-205ENST00000455596 COL25A1Q9BXS0 654 aaPredicted RBP23.86■■□□□ 1.41
HMGB3-205ENST00000455596 TMX1Q9H3N1 280 aa23.86■■□□□ 1.41
HMGB3-205ENST00000455596 VAV3Q9UKW4 847 aa23.86■■□□□ 1.41
HMGB3-205ENST00000455596 ATG2AQ2TAZ0 1938 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 BTBD18B2RXH4 712 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 EML1O00423 815 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 DGKIO75912 1065 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 BAG4O95429 457 aaKnown RBP23.85■■□□□ 1.41
HMGB3-205ENST00000455596 STAG3L1P0CL83 205 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 SKIV2LQ15477 1246 aaKnown RBP23.85■■□□□ 1.41
HMGB3-205ENST00000455596 TARBP2Q15633 366 aaKnown RBP23.85■■□□□ 1.41
HMGB3-205ENST00000455596 MTERF2Q49AM1 385 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 NPAS4Q8IUM7 802 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 TMEM192Q8IY95 271 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 SLFN12Q8IYM2 578 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 ZNF710Q8N1W2 664 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 HAS1Q92839 578 aa23.85■■□□□ 1.41
HMGB3-205ENST00000455596 ZNF689Q96CS4 500 aaPredicted RBP23.85■■□□□ 1.41
HMGB3-205ENST00000455596 LLPHQ9BRT6 129 aaKnown RBP23.85■■□□□ 1.41
HMGB3-205ENST00000455596 RC3H2Q9HBD1 1191 aaKnown RBP23.85■■□□□ 1.41
HMGB3-205ENST00000455596 DKC1O60832 514 aaKnown RBP eCLIP23.84■■□□□ 1.41
HMGB3-205ENST00000455596 STBD1O95210 358 aa23.84■■□□□ 1.41
HMGB3-205ENST00000455596 RBM25P49756 843 aaKnown RBP23.84■■□□□ 1.41
HMGB3-205ENST00000455596 NLRP11P59045 1033 aaKnown RBP23.84■■□□□ 1.41
HMGB3-205ENST00000455596 SH2B1Q9NRF2 756 aaPredicted RBP23.84■■□□□ 1.41
HMGB3-205ENST00000455596 ST3GAL5Q9UNP4 418 aa23.84■■□□□ 1.41
HMGB3-205ENST00000455596 TRANK1O15050 2925 aa23.83■■□□□ 1.41
HMGB3-205ENST00000455596 DDX11L8A8MPP1 907 aa23.83■■□□□ 1.41
HMGB3-205ENST00000455596 QARSP47897 775 aaKnown RBP23.83■■□□□ 1.41
HMGB3-205ENST00000455596 BTG3Q14201 252 aaPredicted RBP23.83■■□□□ 1.41
HMGB3-205ENST00000455596 TJAP1Q5JTD0 557 aa23.83■■□□□ 1.41
HMGB3-205ENST00000455596 FAM228AQ86W67 206 aa23.83■■□□□ 1.41
HMGB3-205ENST00000455596 SYMPKQ92797 1274 aaKnown RBP23.83■■□□□ 1.41
HMGB3-205ENST00000455596 C1orf112Q9NSG2 853 aa23.83■■□□□ 1.41
HMGB3-205ENST00000455596 LRFN2Q9ULH4 789 aa23.83■■□□□ 1.41
HMGB3-205ENST00000455596 RWDD3Q9Y3V2 267 aa23.83■■□□□ 1.41
HMGB3-205ENST00000455596 UNC80Q8N2C7 3258 aa23.83■■□□□ 1.41
HMGB3-205ENST00000455596 DENND3A2RUS2 1198 aa23.82■■□□□ 1.4
HMGB3-205ENST00000455596 TMEM150BA6NC51 233 aa23.82■■□□□ 1.4
HMGB3-205ENST00000455596 H3BNC9 293 aa23.82■■□□□ 1.4
HMGB3-205ENST00000455596 P4HBP07237 508 aaKnown RBP23.82■■□□□ 1.4
HMGB3-205ENST00000455596 SARSP49591 514 aaKnown RBP23.82■■□□□ 1.4
HMGB3-205ENST00000455596 MRPS5P82675 430 aaKnown RBP23.82■■□□□ 1.4
HMGB3-205ENST00000455596 SAFBQ15424 915 aaKnown RBP eCLIP23.82■■□□□ 1.4
HMGB3-205ENST00000455596 CRIPAKQ8N1N5 446 aa23.82■■□□□ 1.4
HMGB3-205ENST00000455596 CEP89Q96ST8 783 aa23.82■■□□□ 1.4
HMGB3-205ENST00000455596 ADAM2Q99965 735 aa23.82■■□□□ 1.4
HMGB3-205ENST00000455596 ADAMTS10Q9H324 1103 aa23.82■■□□□ 1.4
HMGB3-205ENST00000455596 RGS18Q9NS28 235 aa23.82■■□□□ 1.4
HMGB3-205ENST00000455596 RNF216Q9NWF9 866 aaPredicted RBP23.82■■□□□ 1.4
HMGB3-205ENST00000455596 MGEA5O60502 916 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 GPC3P51654 580 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 HMGN5P82970 282 aaKnown RBP23.81■■□□□ 1.4
HMGB3-205ENST00000455596 GPM6BQ13491 265 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 EPHA7Q15375 998 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 PTPROQ16827 1216 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 NCAPH2Q6IBW4 605 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 CMTR2Q8IYT2 770 aaKnown RBP23.81■■□□□ 1.4
HMGB3-205ENST00000455596 C8orf76Q96K31 380 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 SCLT1Q96NL6 688 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 ASB2Q96Q27 587 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 SH2D3AQ9BRG2 576 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 PRUNE2Q8WUY3 3088 aa23.81■■□□□ 1.4
HMGB3-205ENST00000455596 EIF4BP23588 611 aaKnown RBP23.8■■□□□ 1.4
HMGB3-205ENST00000455596 CTNNB1P35222 781 aa23.8■■□□□ 1.4
HMGB3-205ENST00000455596 DNM2P50570 870 aa23.8■■□□□ 1.4
HMGB3-205ENST00000455596 GUCY1B3Q02153 619 aa23.8■■□□□ 1.4
HMGB3-205ENST00000455596 CALCRLQ16602 461 aa23.8■■□□□ 1.4
HMGB3-205ENST00000455596 ANO5Q75V66 913 aa23.8■■□□□ 1.4
HMGB3-205ENST00000455596 PCDHB7Q9Y5E2 793 aa23.8■■□□□ 1.4
HMGB3-205ENST00000455596 IGKV6-21A0A0C4DH24 114 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 C5orf67F2Z3F1 127 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 NEMFO60524 1076 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 RB1P06400 928 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 IBSPP21815 317 aaPredicted RBP23.79■■□□□ 1.4
HMGB3-205ENST00000455596 CDC42EP1Q00587 391 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 SPIRE1Q08AE8 756 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 RABEP1Q15276 862 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 PLA2G4FQ68DD2 849 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 SLC24A5Q71RS6 500 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 FAM184AQ8NB25 1140 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 NLRP7Q8WX94 980 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 CLP1Q92989 425 aaKnown RBP23.79■■□□□ 1.4
HMGB3-205ENST00000455596 MRPL38Q96DV4 380 aaKnown RBP23.79■■□□□ 1.4
HMGB3-205ENST00000455596 ZNF668Q96K58 619 aaPredicted RBP23.79■■□□□ 1.4
HMGB3-205ENST00000455596 JPH2Q9BR39 696 aaPredicted RBP23.79■■□□□ 1.4
HMGB3-205ENST00000455596 UPF2Q9HAU5 1272 aaKnown RBP23.79■■□□□ 1.4
HMGB3-205ENST00000455596 CYP26B1Q9NR63 512 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 PCDHA12Q9UN75 941 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 COG5Q9UP83 839 aa23.79■■□□□ 1.4
HMGB3-205ENST00000455596 TCF20Q9UGU0 1960 aaKnown RBP23.79■■□□□ 1.4
HMGB3-205ENST00000455596 C9IYK1 514 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms