RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 COA1Q9GZY4 146 aa20.77■□□□□ 0.91
SDCBP-204ENST00000447182 UTP11Q9Y3A2 253 aaKnown RBP20.77■□□□□ 0.91
SDCBP-204ENST00000447182 TTI1O43156 1089 aa20.76■□□□□ 0.91
SDCBP-204ENST00000447182 LMNB1P20700 586 aa20.76■□□□□ 0.91
SDCBP-204ENST00000447182 SREBF1P36956 1147 aa20.76■□□□□ 0.91
SDCBP-204ENST00000447182 PPP2R5EQ16537 467 aa20.76■□□□□ 0.91
SDCBP-204ENST00000447182 PTPROQ16827 1216 aa20.76■□□□□ 0.91
SDCBP-204ENST00000447182 LNX1Q8TBB1 728 aaPredicted RBP20.76■□□□□ 0.91
SDCBP-204ENST00000447182 RFFLQ8WZ73 363 aa20.76■□□□□ 0.91
SDCBP-204ENST00000447182 POLR3CQ9BUI4 534 aaPredicted RBP20.76■□□□□ 0.91
SDCBP-204ENST00000447182 KDM4FA0A1W2PPD8 638 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 RSPH10B2B2RC85 870 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 EIF3DO15371 548 aaKnown RBP eCLIP20.75■□□□□ 0.91
SDCBP-204ENST00000447182 EVI5O60447 810 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 GCNT3O95395 438 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 EYA4O95677 639 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 FOSP01100 380 aaPredicted RBP20.75■□□□□ 0.91
SDCBP-204ENST00000447182 TMEM253P0C7T8 217 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 RSPH10BP0C881 870 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 GAP43P17677 238 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 ADRA2BP18089 450 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 CIITAP33076 1130 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 SOX5P35711 763 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 PPATQ06203 517 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 DDR1Q08345 913 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 IFT88Q13099 833 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 SLC15A2Q16348 729 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 CERS5Q8N5B7 392 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 CRAMP1Q96RY5 1269 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 C5orf60A6NFR6 353 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 F8VZ95 297 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 TGFB1I1O43294 461 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 TBCAO75347 108 aaKnown RBP20.75■□□□□ 0.91
SDCBP-204ENST00000447182 GJB7Q6PEY0 223 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 FAM196AQ6ZSG2 479 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 ARMC9Q7Z3E5 817 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 SYT11Q9BT88 431 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 RUSC1Q9BVN2 902 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 STK33Q9BYT3 514 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 TXLNGYQ9BZA5 131 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 BHMT2Q9H2M3 363 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 NYAP2Q9P242 653 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 VAV3Q9UKW4 847 aa20.75■□□□□ 0.91
SDCBP-204ENST00000447182 FAM86B1E9PN63 330 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 PPFIA2O75334 1257 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 FAM86B2P0C5J1 330 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 MMP14P50281 582 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 EIF3BP55884 814 aaKnown RBP20.74■□□□□ 0.91
SDCBP-204ENST00000447182 PTENP60484 403 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 PROCA1Q8NCQ7 364 aaPredicted RBP20.74■□□□□ 0.91
SDCBP-204ENST00000447182 MKNK1Q9BUB5 465 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 RAB17Q9H0T7 212 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 F8W031 263 aaPredicted RBP20.74■□□□□ 0.91
SDCBP-204ENST00000447182 CLIC2O15247 247 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 DDX3YO15523 660 aaKnown RBP20.74■□□□□ 0.91
SDCBP-204ENST00000447182 BUB1BO60566 1050 aaPredicted RBP20.74■□□□□ 0.91
SDCBP-204ENST00000447182 FGGP02679 453 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 PSMC2P35998 433 aaKnown RBP20.74■□□□□ 0.91
SDCBP-204ENST00000447182 SMTNP53814 917 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 DHX9Q08211 1270 aaKnown RBP20.74■□□□□ 0.91
SDCBP-204ENST00000447182 RNF187Q5TA31 235 aaPredicted RBP20.74■□□□□ 0.91
SDCBP-204ENST00000447182 CDC42EP5Q6NZY7 148 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 HHIPL2Q6UWX4 724 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 FMNL3Q8IVF7 1028 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 SLC35G2Q8TBE7 412 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 AMNQ9BXJ7 453 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 CARD9Q9H257 536 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 CNOT8Q9UFF9 292 aaKnown RBP20.74■□□□□ 0.91
SDCBP-204ENST00000447182 DDX20Q9UHI6 824 aaKnown RBP20.74■□□□□ 0.91
SDCBP-204ENST00000447182 RABGAP1Q9Y3P9 1069 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 PCDHB13Q9Y5F0 798 aa20.74■□□□□ 0.91
SDCBP-204ENST00000447182 ZMYM2Q9UBW7 1377 aa20.73■□□□□ 0.91
SDCBP-204ENST00000447182 PPP1R12BO60237 982 aaPredicted RBP20.73■□□□□ 0.91
SDCBP-204ENST00000447182 SERPINB2P05120 415 aa20.73■□□□□ 0.91
SDCBP-204ENST00000447182 EEF2P13639 858 aaKnown RBP20.73■□□□□ 0.91
SDCBP-204ENST00000447182 MNAT1P51948 309 aa20.73■□□□□ 0.91
SDCBP-204ENST00000447182 KCNA1Q09470 495 aa20.73■□□□□ 0.91
SDCBP-204ENST00000447182 ODF2Q5BJF6 829 aa20.73■□□□□ 0.91
SDCBP-204ENST00000447182 SLFN13Q68D06 897 aa20.73■□□□□ 0.91
SDCBP-204ENST00000447182 ATP8B4Q8TF62 1192 aa20.73■□□□□ 0.91
SDCBP-204ENST00000447182 NAP1L3Q99457 506 aaPredicted RBP20.73■□□□□ 0.91
SDCBP-204ENST00000447182 CELF4Q9BZC1 486 aaKnown RBP20.73■□□□□ 0.91
SDCBP-204ENST00000447182 ACTR5Q9H9F9 607 aaPredicted RBP20.73■□□□□ 0.91
SDCBP-204ENST00000447182 NOVA2Q9UNW9 492 aaKnown RBP20.73■□□□□ 0.91
SDCBP-204ENST00000447182 DAAM1Q9Y4D1 1078 aa20.73■□□□□ 0.91
SDCBP-204ENST00000447182 MSH4O15457 936 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 CLUL1Q15846 466 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 CCDC13Q8IYE1 715 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 FAM186BQ8IYM0 893 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 DNAJC18Q9H819 358 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 OSGEPQ9NPF4 335 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 A1CFQ9NQ94 594 aaKnown RBP20.72■□□□□ 0.91
SDCBP-204ENST00000447182 BCCIPQ9P287 314 aaKnown RBP eCLIP20.72■□□□□ 0.91
SDCBP-204ENST00000447182 SPDYE3A6NKU9 549 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 TMOD1P28289 359 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 PLS1Q14651 629 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 DCAF12L1Q5VU92 463 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 RINT1Q6NUQ1 792 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 GLYCTKQ8IVS8 523 aa20.72■□□□□ 0.91
SDCBP-204ENST00000447182 TLCD1Q96CP7 247 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms