RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 A0A1B0GTH6 734 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 PPM1FP49593 454 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-205ENST00000439160 PKN1Q16512 942 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 DNAJC24Q6P3W2 148 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 RSPH3Q86UC2 560 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 CCDC125Q86Z20 511 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 RHPN2Q8IUC4 686 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 ANKRD42Q8N9B4 389 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 FAM167AQ96KS9 214 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 CHP1Q99653 195 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 MTRQ99707 1265 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 POLR3FQ9H1D9 316 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-205ENST00000439160 HACL1Q9UJ83 578 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 DAAM1Q9Y4D1 1078 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 FXR1P51114 621 aaKnown RBP eCLIP13.28□□□□□ -0.28
TCOF1-205ENST00000439160 C10orf76Q5T2E6 689 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 ZNF746Q6NUN9 644 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-205ENST00000439160 TAOK1Q7L7X3 1001 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 GRK7Q8WTQ7 553 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 ZKSCAN4Q969J2 545 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-205ENST00000439160 FAM193BQ96PV7 902 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-205ENST00000439160 KCNQ5Q9NR82 932 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 LRRC4BQ9NT99 713 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 PALMO75781 387 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 PLTPP55058 493 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 DRAP1Q14919 205 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-205ENST00000439160 GIMAP8Q8ND71 665 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-205ENST00000439160 TCP11Q8WWU5 503 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 TRIM11Q96F44 468 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 FAM81BQ96LP2 452 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 TRIM7Q9C029 511 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 TUFT1Q9NNX1 390 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 LIMA1Q9UHB6 759 aaKnown RBP13.28□□□□□ -0.28
TCOF1-205ENST00000439160 FAM205AQ6ZU69 1335 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 SPDYE2BA6NHP3 402 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 LDHAP00338 332 aaKnown RBP13.28□□□□□ -0.28
TCOF1-205ENST00000439160 SPDYE6P0CI01 402 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 CXCL9Q07325 125 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 GRIK5Q16478 980 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 NBPF9Q3BBW0 867 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 CROCCP2Q86T23 111 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 SPATA33Q96N06 139 aa13.28□□□□□ -0.28
TCOF1-205ENST00000439160 PASKQ96RG2 1323 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 A0A1W2PQC6 194 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 TBX3O15119 743 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 ATF2P15336 505 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 GTF2A1P52655 376 aaPredicted RBP13.27□□□□□ -0.28
TCOF1-205ENST00000439160 ITIH3Q06033 890 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 TTLL4Q14679 1199 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 CCDC6Q16204 474 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 ZNF568Q3ZCX4 644 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 MMP19Q99542 508 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 DYNLT1P63172 113 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 SETDB1Q15047 1291 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 SGO2Q562F6 1265 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 C6orf163Q5TEZ5 329 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 KSR1Q8IVT5 923 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 PALM2Q8IXS6 379 aa13.27□□□□□ -0.28
TCOF1-205ENST00000439160 MRPL47Q9HD33 250 aaKnown RBP13.27□□□□□ -0.28
TCOF1-205ENST00000439160 H7C0C1 242 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 ATP5OP48047 213 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 CLCN6P51797 869 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 SEMA3FQ13275 785 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 FBXO38Q6PIJ6 1188 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 PASD1Q8IV76 773 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 RBM46Q8TBY0 533 aaKnown RBP13.27□□□□□ -0.29
TCOF1-205ENST00000439160 DDX4Q9NQI0 724 aaKnown RBP13.27□□□□□ -0.29
TCOF1-205ENST00000439160 EMSYQ7Z589 1322 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 CCDC151A5D8V7 595 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 CAP2P40123 477 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 RPS6P62753 249 aaKnown RBP13.27□□□□□ -0.29
TCOF1-205ENST00000439160 HHATQ5VTY9 493 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 TMEM270Q6UE05 265 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 HEXIM2Q96MH2 286 aaKnown RBP13.27□□□□□ -0.29
TCOF1-205ENST00000439160 FAM217BQ9NTX9 383 aaPredicted RBP13.27□□□□□ -0.29
TCOF1-205ENST00000439160 AGPAT5Q9NUQ2 364 aa13.27□□□□□ -0.29
TCOF1-205ENST00000439160 C19orf81C9J6K1 198 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 PDXKO00764 312 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 ZSCAN26Q16670 478 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 ZNF667Q5HYK9 610 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 EARS2Q5JPH6 523 aaKnown RBP13.26□□□□□ -0.29
TCOF1-205ENST00000439160 LMBRD2Q68DH5 695 aaPredicted RBP13.26□□□□□ -0.29
TCOF1-205ENST00000439160 LRP10Q7Z4F1 713 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 NME8Q8N427 588 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 CALN1Q9BXU9 219 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 SNX25Q9H3E2 840 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 ZC2HC1CQ53FD0 456 aaPredicted RBP13.26□□□□□ -0.29
TCOF1-205ENST00000439160 GLYCTKQ8IVS8 523 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 HDAC6Q9UBN7 1215 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 LRRD1A4D1F6 860 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 RPA1P27694 616 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 STAT5BP51692 787 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 CCZ1BP86790 482 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 CCZ1P86791 482 aaPredicted RBP13.26□□□□□ -0.29
TCOF1-205ENST00000439160 E4F1Q66K89 784 aaPredicted RBP13.26□□□□□ -0.29
TCOF1-205ENST00000439160 PLA2G4FQ68DD2 849 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 OR6B2Q6IFH4 312 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 CABS1Q96KC9 395 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 RNF14Q9UBS8 474 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 CAPN11Q9UMQ6 739 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms