RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 BROXQ5VW32 411 aa7.92□□□□□ -1.14
CCDC88A-206ENST00000430086 GRAMD4Q6IC98 578 aa7.92□□□□□ -1.14
CCDC88A-206ENST00000430086 FRMD5Q7Z6J6 570 aa7.92□□□□□ -1.14
CCDC88A-206ENST00000430086 USP40Q9NVE5 1235 aa7.92□□□□□ -1.14
CCDC88A-206ENST00000430086 A0A0G2JNJ9 132 aa7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 OTOL1A6NHN0 477 aaPredicted RBP7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 PRPF6O94906 941 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 CSF2RBP32927 897 aa7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 BCAR1P56945 870 aa7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 MAP3K12Q12852 859 aa7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 FBLN7Q53RD9 439 aa7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 PRAMEF9Q5VWM5 478 aa7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 BORAQ6PGQ7 559 aa7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 RASSF3Q86WH2 238 aa7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 ZNF496Q96IT1 587 aaPredicted RBP7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 FAM126AQ9BYI3 521 aaPredicted RBP7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 Q9UFV3 132 aa7.91□□□□□ -1.14
CCDC88A-206ENST00000430086 ADCY8P40145 1251 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 SESN3P58005 492 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 ADCY2Q08462 1091 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 KIAA1841Q6NSI8 718 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 FRMD7Q6ZUT3 714 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 OTOP2Q7RTS6 562 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 IFNL2Q8IZJ0 200 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 MYL10Q9BUA6 226 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 CARD11Q9BXL7 1154 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 POFUT1Q9H488 388 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 RAPGEFL1Q9UHV5 662 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 MSRAQ9UJ68 235 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 MCM8Q9UJA3 840 aa7.9□□□□□ -1.14
CCDC88A-206ENST00000430086 GPR39O43194 453 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 INHBBP09529 407 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 NOLC1Q14978 699 aaKnown RBP eCLIP7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 ZFYVE27Q5T4F4 411 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 RNF219Q5W0B1 726 aaPredicted RBP7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 TRIM68Q6AZZ1 485 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 ESPNLQ6ZVH7 1005 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 TTLL10Q6ZVT0 673 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 LGI4Q8N135 537 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 WDR66Q8TBY9 1149 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 RPGRQ92834 1020 aaKnown RBP7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 SEMA4AQ9H3S1 761 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 KCMF1Q9P0J7 381 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 ATP8A1Q9Y2Q0 1164 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 ZDHHC9Q9Y397 364 aa7.89□□□□□ -1.15
CCDC88A-206ENST00000430086 ELL2O00472 640 aaPredicted RBP7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 MAFGO15525 162 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 B4GALT3O60512 393 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 RAB11FIP3O75154 756 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 AMPD3Q01432 767 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 FAPQ12884 760 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 USP10Q14694 798 aaKnown RBP7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 ZNF827Q17R98 1081 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 LHFPL2Q6ZUX7 228 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 DDX42Q86XP3 938 aaKnown RBP eCLIP7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 KBTBD2Q8IY47 623 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 BCL6BQ8N143 479 aaPredicted RBP7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 CLRN3Q8NCR9 226 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 ATL2Q8NHH9 583 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 PITHD1Q9GZP4 211 aaPredicted RBP7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 MS4A5Q9H3V2 200 aa7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 NOC2LQ9Y3T9 749 aaKnown RBP7.88□□□□□ -1.15
CCDC88A-206ENST00000430086 PHLDB1Q86UU1 1377 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 HMGCRP04035 888 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 HOXA5P20719 270 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 KCNQ1P51787 676 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 HDGFL2Q7Z4V5 671 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 BMP8AQ7Z5Y6 402 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 PLEKHH3Q7Z736 793 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 RALYLQ86SE5 291 aaKnown RBP7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 SPATS2Q86XZ4 545 aaKnown RBP7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 ZDHHC14Q8IZN3 488 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 OR5AN1Q8NGI8 311 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 BRINP2Q9C0B6 783 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 HAPLN2Q9GZV7 340 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 WNT8AQ9H1J5 351 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 CDC42EP3Q9UKI2 254 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 DENND2AQ9ULE3 1009 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 DUSP10Q9Y6W6 482 aa7.87□□□□□ -1.15
CCDC88A-206ENST00000430086 LCHNA4D1U4 455 aa7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 ANKRD62A6NC57 917 aa7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 KDM1AO60341 852 aa7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 TMPRSS15P98073 1019 aa7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 SURF1Q15526 300 aa7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 DGKDQ16760 1214 aa7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 UNQ6494/PRO21346Q6UXR6 183 aa7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 CXorf67Q86X51 503 aaPredicted RBP7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 ZCRB1Q8TBF4 217 aaKnown RBP7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 TEPSINQ96N21 525 aa7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 INVSQ9Y283 1065 aa7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 VWA7Q9Y334 891 aa7.86□□□□□ -1.15
CCDC88A-206ENST00000430086 A0A0A6YYJ9 748 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 APOL3O95236 402 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 ZNF888P0CJ79 500 aaPredicted RBP7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 ZMAT1Q5H9K5 638 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 ZBTB41Q5SVQ8 909 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 IQSEC1Q6DN90 963 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 LARP4Q71RC2 724 aaKnown RBP eCLIP7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 GPR155Q7Z3F1 870 aa7.85□□□□□ -1.15
CCDC88A-206ENST00000430086 MTG2Q9H4K7 406 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms