RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 RSRC2Q7L4I2 434 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 RALYLQ86SE5 291 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 LCORLQ8N3X6 602 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 FRS2Q8WU20 508 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 SCYL1Q96KG9 808 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 BEX2Q9BXY8 128 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 EPB41L5Q9HCM4 733 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ACSS2Q9NR19 701 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 RRBP1Q9P2E9 1410 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 APEX2Q9UBZ4 518 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 GPN3Q9UHW5 284 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 DDX41Q9UJV9 622 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CCPG1Q9ULG6 757 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 PNMA8BQ9ULN7 279 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 TET3O43151 1660 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CEP170BQ9Y4F5 1589 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 TRGV8A0A0C4DH27 118 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 SHTN1A0MZ66 631 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 IDSB3KWA1 339 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 NEDD8-MDP1E9PL57 170 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 IDSP22304 550 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ATICP31939 592 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ICA1Q05084 483 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 PPFIA1Q13136 1202 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 TOB2Q14106 344 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM47AQ5JRC9 791 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 BEND3Q5T5X7 828 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CST9Q5W186 159 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CES4AQ5XG92 561 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 TLK2Q86UE8 772 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 TRIM48Q8IWZ4 208 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CCDC150Q8NCX0 1101 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 POF1BQ8WVV4 589 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 DEPDC7Q96QD5 511 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CLSTN3Q9BQT9 956 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 SDF4Q9BRK5 362 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ACE2Q9BYF1 805 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 TTC12Q9H892 705 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 RAVER2Q9HCJ3 691 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 EMILIN3Q9NT22 766 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC6A14Q9UN76 642 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 INVSQ9Y283 1065 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ITM2BQ9Y287 266 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 WIZO95785 1651 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 KIF21AQ7Z4S6 1674 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 PIK3C2GO75747 1445 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 H3BUI4 141 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 EYA2O00167 538 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 PRPF3O43395 683 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 LZTS3O60299 673 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 KCNK5O95279 499 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 LDOC1O95751 146 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 PTMAP06454 111 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ASGR1P07306 291 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 SLFN14P0C7P3 912 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 KRT10P13645 584 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CD99P14209 185 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 VAV1P15498 845 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ADORA2AP29274 412 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 WEE1P30291 646 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ABL2P42684 1182 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ERVK-9P63128 1117 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ERVK-24P63145 666 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 E2F1Q01094 437 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 KCNA10Q16322 511 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 LRRC26Q2I0M4 334 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 KIAA0930Q6ICG6 404 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC36A4Q6YBV0 504 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 LRRC8DQ7L1W4 858 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CACUL1Q86Y37 369 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 PALB2Q86YC2 1186 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 MRPL50Q8N5N7 158 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 C9orf43Q8TAL5 461 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 SCFD2Q8WU76 684 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM3CQ92520 227 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM89AQ96GI7 184 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 RADILQ96JH8 1075 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 JPH2Q9BR39 696 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM167BQ9BTA0 163 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 TEKT3Q9BXF9 490 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CDT1Q9H211 546 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CHST11Q9NPF2 352 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 BARX2Q9UMQ3 279 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ABCA1O95477 2261 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 LTBP3Q9NS15 1303 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CEP295Q9C0D2 2601 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 SPDYE5A6NIY4 337 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CHURC1-FNTBB4DL54 471 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 H3BM21 787 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CYP26A1O43174 497 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 PDE8AO60658 829 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 GH1P01241 217 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CALM1P0DP23 149 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CALM2P0DP24 149 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CALM3P0DP25 149 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 TCN2P20062 427 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CPA2P48052 419 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 FNTBP49356 437 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 SPIDRQ14159 915 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms