RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 BTNL9Q6UXG8 535 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 PROSER2Q86WR7 435 aaPredicted RBP11.6□□□□□ -0.55
USP54-204ENST00000422491 NELFCDQ8IXH7 590 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 SPZ1Q9BXG8 430 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 CPVLQ9H3G5 476 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 SEMA4AQ9H3S1 761 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 GRHL1Q9NZI5 618 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 AMFRQ9UKV5 643 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 COL5A2P05997 1499 aaPredicted RBP11.6□□□□□ -0.55
USP54-204ENST00000422491 DCCP43146 1447 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 USP17L3A6NCW0 530 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 USP17L4A6NCW7 530 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 DDX3XO00571 662 aaKnown RBP eCLIP11.6□□□□□ -0.55
USP54-204ENST00000422491 EVI5O60447 810 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 GJB6O95452 261 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 FESP07332 822 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 GOLGA8HP0CJ92 632 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 AUHQ13825 339 aaKnown RBP11.6□□□□□ -0.55
USP54-204ENST00000422491 PDIA5Q14554 519 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 PPP2R5EQ16537 467 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 SLC4A8Q2Y0W8 1093 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 USP17L1Q7RTZ2 530 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 CROCCP2Q86T23 111 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 JAMLQ86YT9 394 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 ANKRD27Q96NW4 1050 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 YIPF3Q9GZM5 350 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 FGFR1OP2Q9NVK5 253 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 ETAA1Q9NY74 926 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 ZFATQ9P243 1243 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 PNMA3Q9UL41 463 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.6□□□□□ -0.55
USP54-204ENST00000422491 SNX24Q9Y343 169 aa11.6□□□□□ -0.55
USP54-204ENST00000422491 KLRF2D3W0D1 207 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 O00370 1275 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 SUN1O94901 812 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 USP17L8P0C7I0 530 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 DHX34Q14147 1143 aaKnown RBP11.59□□□□□ -0.55
USP54-204ENST00000422491 TMEM266Q2M3C6 531 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 NBPF20Q3BBV1 942 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 KRT79Q5XKE5 535 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 FITM2Q8N6M3 262 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 OLIG1Q8TAK6 271 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 SCFD1Q8WVM8 642 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 IFT74Q96LB3 600 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 LZTS2Q9BRK4 669 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 OSGEPQ9NPF4 335 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 TBC1D7Q9P0N9 293 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 BIN2Q9UBW5 565 aaPredicted RBP11.59□□□□□ -0.55
USP54-204ENST00000422491 AJAP1Q9UKB5 411 aaPredicted RBP11.59□□□□□ -0.55
USP54-204ENST00000422491 PPP1R9AQ9ULJ8 1098 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 MTMR7Q9Y216 660 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 STK38LQ9Y2H1 464 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 DIS3Q9Y2L1 958 aaKnown RBP11.59□□□□□ -0.55
USP54-204ENST00000422491 WFS1O76024 890 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 SNUPNO95149 360 aaKnown RBP11.59□□□□□ -0.55
USP54-204ENST00000422491 TDP2O95551 362 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 PECAM1P16284 738 aaPredicted RBP11.59□□□□□ -0.55
USP54-204ENST00000422491 PON1P27169 355 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 RWDD2BP57060 319 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 MAPK7Q13164 816 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 ADAM9Q13443 819 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 THEMIS2Q5TEJ8 643 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 MFSD5Q6N075 450 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 NAF1Q96HR8 494 aaKnown RBP11.59□□□□□ -0.55
USP54-204ENST00000422491 FAM167BQ9BTA0 163 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 CARD9Q9H257 536 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 RXFP1Q9HBX9 757 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 TMEM260Q9NX78 707 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 PRKAG3Q9UGI9 489 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 HDAC9Q9UKV0 1011 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 TRIM33Q9UPN9 1127 aa11.59□□□□□ -0.55
USP54-204ENST00000422491 TCP11X1B4DZS4 312 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 RIPK2O43353 540 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 AHCYL1O43865 530 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 CCNB1P14635 433 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 IL6STP40189 918 aaPredicted RBP11.58□□□□□ -0.56
USP54-204ENST00000422491 SLCO1A2P46721 670 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 JAM2P57087 298 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 LACTBP83111 547 aaPredicted RBP11.58□□□□□ -0.56
USP54-204ENST00000422491 PPATQ06203 517 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 EDRF1Q3B7T1 1238 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 ADAT2Q7Z6V5 191 aaKnown RBP11.58□□□□□ -0.56
USP54-204ENST00000422491 EXOC3L1Q86VI1 746 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 REXO1Q8N1G1 1221 aaKnown RBP11.58□□□□□ -0.56
USP54-204ENST00000422491 FAM84BQ96KN1 310 aaPredicted RBP11.58□□□□□ -0.56
USP54-204ENST00000422491 TMEM47Q9BQJ4 181 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 OSBPL1AQ9BXW6 950 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 RAB34Q9BZG1 259 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 STMN4Q9H169 189 aaPredicted RBP11.58□□□□□ -0.56
USP54-204ENST00000422491 MCM9Q9NXL9 1143 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 THRAP3Q9Y2W1 955 aaKnown RBP11.58□□□□□ -0.56
USP54-204ENST00000422491 NCANO14594 1321 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 ATP4AP20648 1035 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 PTGIRP43119 386 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 NT5C2P49902 561 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 GALCP54803 685 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 ATP11AP98196 1134 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 UBE4AQ14139 1066 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 TAF11Q15544 211 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 CCDC38Q502W7 563 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms