RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 GTF2IRD2BQ6EKJ0 949 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 CC2D1AQ6P1N0 951 aaPredicted RBP4.99□□□□□ -1.61
HMGB1-204ENST00000399489 C1orf228Q6PIY5 440 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 CD300LDQ6UXZ3 194 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 GTF2IRD2Q86UP8 949 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 KYQ8NBH2 561 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 COPS5Q92905 334 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 TTC17Q96AE7 1141 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 CDC6Q99741 560 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 TRIM39Q9HCM9 518 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 ANLNQ9NQW6 1124 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 LRP2BPQ9P2M1 347 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 EVLQ9UI08 416 aaPredicted RBP4.99□□□□□ -1.61
HMGB1-204ENST00000399489 ZBTB21Q9ULJ3 1066 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 PNMA8BQ9ULN7 279 aaPredicted RBP4.99□□□□□ -1.61
HMGB1-204ENST00000399489 DMTF1Q9Y222 760 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 MYRFQ9Y2G1 1151 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 COA3Q9Y2R0 106 aaPredicted RBP4.99□□□□□ -1.61
HMGB1-204ENST00000399489 TIMM13Q9Y5L4 95 aaPredicted RBP4.99□□□□□ -1.61
HMGB1-204ENST00000399489 KAT6BQ8WYB5 2073 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 ABHD14A-ACY1A0A1B0GW23 586 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 C22orf46C9J442 243 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 ERC2O15083 957 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 HIP1RO75146 1068 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 THBDP07204 575 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 PF4V1P10720 104 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 DLX2Q07687 328 aaPredicted RBP4.98□□□□□ -1.61
HMGB1-204ENST00000399489 BIRC3Q13489 604 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 CNGB1Q14028 1251 aaPredicted RBP4.98□□□□□ -1.61
HMGB1-204ENST00000399489 TOMM20Q15388 145 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 CHRNA2Q15822 529 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 GPR158Q5T848 1215 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 MROH9Q5TGP6 573 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 E4F1Q66K89 784 aaPredicted RBP4.98□□□□□ -1.61
HMGB1-204ENST00000399489 TRIM59Q8IWR1 403 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 LGI4Q8N135 537 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 CBARPQ8N350 705 aaPredicted RBP4.98□□□□□ -1.61
HMGB1-204ENST00000399489 NKAPQ8N5F7 415 aaKnown RBP4.98□□□□□ -1.61
HMGB1-204ENST00000399489 LINC00482Q8N8I6 264 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 PLEKHO2Q8TD55 490 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 ADAMTS17Q8TE56 1095 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 CLIP3Q96DZ5 547 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 MTFR1LQ9H019 292 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 IFT22Q9H7X7 185 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.98□□□□□ -1.61
HMGB1-204ENST00000399489 NLRC4Q9NPP4 1024 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 GPRC5CQ9NQ84 441 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 SPATA6Q9NWH7 488 aaPredicted RBP4.98□□□□□ -1.61
HMGB1-204ENST00000399489 FBLN5Q9UBX5 448 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 APEX2Q9UBZ4 518 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 DDX20Q9UHI6 824 aaKnown RBP4.98□□□□□ -1.61
HMGB1-204ENST00000399489 HDAC9Q9UKV0 1011 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 SIT1Q9Y3P8 196 aa4.98□□□□□ -1.61
HMGB1-204ENST00000399489 TRBV23-1A0A0A0MS06 115 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 A0A1W2PQU0 124 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 RHOBTB3O94955 611 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 C8BP07358 591 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 INSRRP14616 1297 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 BPIP17213 487 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 RRM1P23921 792 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 RPL13P26373 211 aaKnown RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 DDIT3P35638 169 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 MAGEA10P43363 369 aaPredicted RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 SLC6A11P48066 632 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 KCNAB2Q13303 367 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 ZNF460Q14592 562 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 TRIM61Q5EBN2 209 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 FAM26FQ5R3K3 315 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 JAKMIP3Q5VZ66 844 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 ZKSCAN2Q63HK3 967 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 PDXDC1Q6P996 788 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 HHIPL2Q6UWX4 724 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 KRT77Q7Z794 578 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 ZNF761Q86XN6 746 aaPredicted RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 CLASRPQ8N2M8 674 aaKnown RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 PARD3BQ8TEW8 1205 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 DIO2Q92813 273 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 C11orf84Q9BUA3 381 aaPredicted RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 MENTQ9BUN1 341 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 SLC13A1Q9BZW2 595 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 NKX2-4Q9H2Z4 354 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 MAN1C1Q9NR34 630 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 RCAN3Q9UKA8 241 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 NOL7Q9UMY1 257 aaKnown RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 APOBEC2Q9Y235 224 aaKnown RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 TNPO3Q9Y5L0 923 aaKnown RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 FRMPD2Q68DX3 1309 aaPredicted RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 MEFVO15553 781 aaPredicted RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 KPNA6O60684 536 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 CYP7B1O75881 506 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 ITGB3P05106 788 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 LPOP22079 712 aaPredicted RBP4.97□□□□□ -1.61
HMGB1-204ENST00000399489 HOXC12P31275 282 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 THBS2P35442 1172 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 ID4P47928 161 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 NEK4P51957 841 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 GTF2H3Q13889 308 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 CCDC96Q2M329 555 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 RGL3Q3MIN7 710 aa4.97□□□□□ -1.61
HMGB1-204ENST00000399489 DACT2Q5SW24 774 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms