RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 RTP1P59025 263 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 PRPF4BQ13523 1007 aaKnown RBP10.12□□□□□ -0.79
UPF2-202ENST00000357604 MYOCDQ8IZQ8 938 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 TIGD1Q96MW7 591 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 CYTH3O43739 400 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 PGK1P00558 417 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 CYBAP13498 195 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 SIAH1Q8IUQ4 282 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.12□□□□□ -0.79
UPF2-202ENST00000357604 RIPK3Q9Y572 518 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 TACC3Q9Y6A5 838 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 ARVCFO00192 962 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 MEIS2O14770 477 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 CETN3O15182 167 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 ARP10275 920 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 NFX1Q12986 1120 aaKnown RBP10.12□□□□□ -0.79
UPF2-202ENST00000357604 CCL14Q16627 93 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 CAVIN1Q6NZI2 390 aaKnown RBP10.12□□□□□ -0.79
UPF2-202ENST00000357604 RSPH1Q8WYR4 309 aa10.12□□□□□ -0.79
UPF2-202ENST00000357604 TRPM7Q96QT4 1865 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 SELPP16109 830 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 DDIT3P35638 169 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 NOTUMQ6P988 496 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 CCDC51Q96ER9 411 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 ZFP91Q96JP5 570 aaPredicted RBP10.11□□□□□ -0.79
UPF2-202ENST00000357604 MRPL9Q9BYD2 267 aaKnown RBP10.11□□□□□ -0.79
UPF2-202ENST00000357604 SLC38A7Q9NVC3 462 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 HNRNPDLO14979 420 aaKnown RBP10.11□□□□□ -0.79
UPF2-202ENST00000357604 MRPS6P82932 125 aaKnown RBP10.11□□□□□ -0.79
UPF2-202ENST00000357604 FPGSQ05932 587 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 CT47A1Q5JQC4 288 aaPredicted RBP10.11□□□□□ -0.79
UPF2-202ENST00000357604 AFAP1L1Q8TED9 768 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 FAM81BQ96LP2 452 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 USP28Q96RU2 1077 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 PUF60Q9UHX1 559 aaKnown RBP10.11□□□□□ -0.79
UPF2-202ENST00000357604 ASGR1P07306 291 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 RASGRP2Q7LDG7 609 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 TRIML1Q8N9V2 468 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 TRIB2Q92519 343 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 INPP4AQ96PE3 977 aaPredicted RBP10.11□□□□□ -0.79
UPF2-202ENST00000357604 ANKFY1Q9P2R3 1169 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 SSX2IPQ9Y2D8 614 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 EXOC3O60645 756 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 PLCG1P19174 1290 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 ACLYP53396 1101 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 SOX10P56693 466 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 CAMK4Q16566 473 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 KLHL10Q6JEL2 608 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 ARMCX5Q6P1M9 558 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 VPS36Q86VN1 386 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 ELMOD1Q8N336 334 aa10.11□□□□□ -0.79
UPF2-202ENST00000357604 CTSHP09668 335 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 RPA1P27694 616 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 BIRC3Q13489 604 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 PPFIBP1Q86W92 1011 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 LINC00301Q8NCQ3 95 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 PIN4Q9Y237 131 aaKnown RBP10.1□□□□□ -0.79
UPF2-202ENST00000357604 PHIPQ8WWQ0 1821 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 POTEMA6NI47 508 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 TRAK2O60296 914 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 PRKCBP05771 671 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 AP3M2P53677 418 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 KRT17Q04695 432 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 FAM26FQ5R3K3 315 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 KIAA1841Q6NSI8 718 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 PPP4R3CPQ6ZMV5 832 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 BHMT2Q9H2M3 363 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 ZNF536O15090 1300 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 GOLGA6L3A6NEY3 463 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 SMIM22K7EJ46 135 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 ITGA4P13612 1032 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 PFKFB1P16118 471 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 KARSQ15046 597 aaKnown RBP10.1□□□□□ -0.79
UPF2-202ENST00000357604 LRRC41Q15345 812 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 BEST2Q8NFU1 509 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 POMGNT1Q8WZA1 660 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 EMID1Q96A84 441 aaPredicted RBP10.1□□□□□ -0.79
UPF2-202ENST00000357604 AKAP11Q9UKA4 1901 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 SCN9AQ15858 1988 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 ZNF202O95125 648 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 CTDNEP1O95476 244 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 TMEM191BP0C7N4 346 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 MYO1EQ12965 1108 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 NBPF20Q3BBV1 942 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 ODF2Q5BJF6 829 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 HIPK3Q9H422 1215 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 TBC1D7Q9P0N9 293 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 KANSL3Q9P2N6 904 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 SERTAD1Q9UHV2 236 aa10.1□□□□□ -0.79
UPF2-202ENST00000357604 SMIM35A0A1B0GVV1 85 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 PLS3P13797 630 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 RAB30Q15771 203 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 CXCL17Q6UXB2 119 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 THEM5Q8N1Q8 247 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 ABHD8Q96I13 439 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 MSTO1Q9BUK6 570 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 APOL6Q9BWW8 343 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 LAMA4Q16363 1823 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 SYNRGQ9UMZ2 1314 aa10.09□□□□□ -0.79
UPF2-202ENST00000357604 A0A1B0GVL5 298 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms