RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 PSD3Q9NYI0 1048 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 ATF2P15336 505 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 GAP43P17677 238 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 STAT3P40763 770 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 HMGCS2P54868 508 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 SNAP25P60880 206 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 SNX1Q13596 522 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 LMNTD2Q8IXW0 634 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 PROM2Q8N271 834 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 C7orf31Q8N865 590 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 PPFIBP2Q8ND30 876 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 GRK7Q8WTQ7 553 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 YY1P25490 414 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 ADCY1Q08828 1119 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 BEND6Q5SZJ8 279 aaPredicted RBP13.31□□□□□ -0.28
COLCA1-201ENST00000355430 PDXDC2PQ6P474 469 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 DCUN1D2Q6PH85 259 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 HNRNPLLQ8WVV9 542 aaKnown RBP13.31□□□□□ -0.28
COLCA1-201ENST00000355430 TCP11Q8WWU5 503 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 TRIM9Q9C026 710 aa13.31□□□□□ -0.28
COLCA1-201ENST00000355430 TDP2O95551 362 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 RPSAP08865 295 aaKnown RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 CNTNAP5Q8WYK1 1306 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 PCIF1Q9H4Z3 704 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 FEZ2Q9UHY8 353 aaPredicted RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 H3BQF6 201 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 GTF2A2P52657 109 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 SFI1A8K8P3 1242 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 RHOBTB3O94955 611 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 RNF10Q8N5U6 811 aaKnown RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 CEP170P1Q96L14 293 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 ZMYND12Q9H0C1 365 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 CNOT10Q9H9A5 744 aaKnown RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 ZNF446Q9NWS9 450 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 HOXA7P31268 230 aaPredicted RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 CASP7P55210 303 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 KCNH2Q12809 1159 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 NEDD9Q14511 834 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 PPP4R3CPQ6ZMV5 832 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 FAM151AQ8WW52 585 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 RPAP3Q9H6T3 665 aaPredicted RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 ACTR5Q9H9F9 607 aaPredicted RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 KDM6AO15550 1401 aaPredicted RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 FAM196BA6NMK8 535 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 ZKSCAN8Q15776 578 aaPredicted RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 NTRK3Q16288 839 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 RSRC2Q7L4I2 434 aaKnown RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 GUF1Q8N442 669 aaKnown RBP13.3□□□□□ -0.28
COLCA1-201ENST00000355430 ZNF280CQ8ND82 737 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 NEK9Q8TD19 979 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 CEP95Q96GE4 821 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 RMDN3Q96TC7 470 aa13.3□□□□□ -0.28
COLCA1-201ENST00000355430 STK4Q13043 487 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 AP3B2Q13367 1082 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 INTS5Q6P9B9 1019 aaKnown RBP13.29□□□□□ -0.28
COLCA1-201ENST00000355430 SH2D3CQ8N5H7 860 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 MCUR1Q96AQ8 359 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 NSUN4Q96CB9 384 aaKnown RBP13.29□□□□□ -0.28
COLCA1-201ENST00000355430 CCSER1Q9C0I3 900 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 ARHGAP23Q9P227 1491 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 PDS5AQ29RF7 1337 aaKnown RBP13.29□□□□□ -0.28
COLCA1-201ENST00000355430 KNDC1Q76NI1 1749 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 DLATP10515 647 aaKnown RBP13.29□□□□□ -0.28
COLCA1-201ENST00000355430 FCGRTP55899 365 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 GUCY1A3Q02108 690 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 CEP63Q96MT8 703 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 RRAGCQ9HB90 399 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 POLD4Q9HCU8 107 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 UBE2TQ9NPD8 197 aaPredicted RBP13.29□□□□□ -0.28
COLCA1-201ENST00000355430 PRDM5Q9NQX1 630 aaPredicted RBP13.29□□□□□ -0.28
COLCA1-201ENST00000355430 ANKFY1Q9P2R3 1169 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 DLG5Q8TDM6 1919 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 GRID2IPA4D2P6 1211 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 CIB2O75838 187 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 STAMBPO95630 424 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 ABL1P00519 1130 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 MUM1L1Q5H9M0 696 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 NLRP14Q86W24 1093 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 ZNF653Q96CK0 615 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 POTEB3A0JP26 581 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 POTECB2RU33 542 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 POTEBQ6S5H4 581 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 SFR1Q86XK3 245 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 LPAR1Q92633 364 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 RAB3IPQ96QF0 476 aaPredicted RBP13.29□□□□□ -0.28
COLCA1-201ENST00000355430 DDX47Q9H0S4 455 aaKnown RBP13.29□□□□□ -0.28
COLCA1-201ENST00000355430 TMEM60Q9H2L4 133 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 DAGLAQ9Y4D2 1042 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 MEGF6O75095 1541 aa13.29□□□□□ -0.28
COLCA1-201ENST00000355430 CCDC188H7C350 402 aa13.28□□□□□ -0.28
COLCA1-201ENST00000355430 SUN1O94901 812 aa13.28□□□□□ -0.28
COLCA1-201ENST00000355430 COG2Q14746 738 aa13.28□□□□□ -0.28
COLCA1-201ENST00000355430 ATP6V1G3Q96LB4 118 aa13.28□□□□□ -0.28
COLCA1-201ENST00000355430 RUNDC3BQ96NL0 473 aa13.28□□□□□ -0.28
COLCA1-201ENST00000355430 GBA2Q9HCG7 927 aaPredicted RBP13.28□□□□□ -0.28
COLCA1-201ENST00000355430 IFNB1P01574 187 aa13.28□□□□□ -0.28
COLCA1-201ENST00000355430 ZNF18P17022 549 aa13.28□□□□□ -0.28
COLCA1-201ENST00000355430 JAK3P52333 1124 aa13.28□□□□□ -0.28
COLCA1-201ENST00000355430 CTTNQ14247 550 aaKnown RBP13.28□□□□□ -0.28
COLCA1-201ENST00000355430 TSNAXIP1Q2TAA8 658 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms