RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 LZTS1Q9Y250 596 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 ITGB5P18084 799 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 CLCN5P51795 746 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 PLCB3Q01970 1234 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 KRT17Q04695 432 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 ITIH3Q06033 890 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 TRDNQ13061 729 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 ANGPT1Q15389 498 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 CWF19L1Q69YN2 538 aaKnown RBP12.79□□□□□ -0.36
RTN3-204ENST00000354497 SLC24A5Q71RS6 500 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 NME8Q8N427 588 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 C12orf76Q8N812 135 aaPredicted RBP12.79□□□□□ -0.36
RTN3-204ENST00000354497 TMEM87AQ8NBN3 555 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 RASGRP4Q8TDF6 673 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 ZNF558Q96NG5 402 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 PCYT2Q99447 389 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 DSCC1Q9BVC3 393 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 LNPKQ9C0E8 428 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 JPH1Q9HDC5 661 aaPredicted RBP12.79□□□□□ -0.36
RTN3-204ENST00000354497 SEC63Q9UGP8 760 aaKnown RBP12.79□□□□□ -0.36
RTN3-204ENST00000354497 FBXL21Q9UKT6 434 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 ST3GAL5Q9UNP4 418 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 HCFC2Q9Y5Z7 792 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 CACNA1AO00555 2505 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 SPTBN4Q9H254 2564 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 SMIM35A0A1B0GVV1 85 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 STK25O00506 426 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 RFX1P22670 979 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 SMC1AQ14683 1233 aaKnown RBP12.79□□□□□ -0.36
RTN3-204ENST00000354497 WTAPQ15007 396 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 ODR4Q5SWX8 454 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 KANK3Q6NY19 840 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 MTHFD1LQ6UB35 978 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 KCNT2Q6UVM3 1135 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 KIAA2013Q8IYS2 634 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 ABI1Q8IZP0 508 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 RNF169Q8NCN4 708 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 RMDN1Q96DB5 314 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 RRP36Q96EU6 259 aaKnown RBP12.79□□□□□ -0.36
RTN3-204ENST00000354497 CDHR5Q9HBB8 845 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 SENP2Q9HC62 589 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 SLC9A2Q9UBY0 812 aa12.79□□□□□ -0.36
RTN3-204ENST00000354497 CACNA1HO95180 2353 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 C9IYK1 514 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 MEIS2O14770 477 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 GPR182O15218 404 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 PI15O43692 258 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 PPM1AP35813 382 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 STAT5BP51692 787 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 UBE2SQ16763 222 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 CATIPQ7Z7H3 387 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 CCDC105Q8IYK2 499 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 TMEM40Q8WWA1 233 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 TMEM117Q9H0C3 514 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 TMEM161AQ9NX61 479 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 NAP1L2Q9ULW6 460 aaPredicted RBP12.78□□□□□ -0.36
RTN3-204ENST00000354497 KDM3AQ9Y4C1 1321 aa12.78□□□□□ -0.36
RTN3-204ENST00000354497 CLASP2O75122 1294 aaKnown RBP12.77□□□□□ -0.37
RTN3-204ENST00000354497 AOC1P19801 751 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 KLRC1P26715 233 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 KIZQ2M2Z5 673 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 ATAT1Q5SQI0 421 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 ZDHHC14Q8IZN3 488 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 LRRC43Q8N309 656 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 DTWD2Q8NBA8 298 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 OSMRQ99650 979 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 SDF4Q9BRK5 362 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 SPG21Q9NZD8 308 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 UBIAD1Q9Y5Z9 338 aa12.77□□□□□ -0.37
RTN3-204ENST00000354497 PTPRZ1P23471 2315 aaPredicted RBP12.77□□□□□ -0.37
RTN3-204ENST00000354497 FNDC1Q4ZHG4 1894 aaPredicted RBP12.76□□□□□ -0.37
RTN3-204ENST00000354497 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.76□□□□□ -0.37
RTN3-204ENST00000354497 C2orf71A6NGG8 1288 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 SPDYE3A6NKU9 549 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 HIP1O00291 1037 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 PIK3CDO00329 1044 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 BACH1O14867 736 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 HOXA2O43364 376 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 LMNAP02545 664 aaKnown RBP12.76□□□□□ -0.37
RTN3-204ENST00000354497 ARP10275 920 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 METAP2P50579 478 aaKnown RBP eCLIP12.76□□□□□ -0.37
RTN3-204ENST00000354497 ACTR2P61160 394 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 BMS1Q14692 1282 aaKnown RBP12.76□□□□□ -0.37
RTN3-204ENST00000354497 SART3Q15020 963 aaKnown RBP12.76□□□□□ -0.37
RTN3-204ENST00000354497 B4GALNT3Q6L9W6 998 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 KIAA1841Q6NSI8 718 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 LRRC55Q6ZSA7 311 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 PLPPR4Q7Z2D5 763 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 RALYLQ86SE5 291 aaKnown RBP12.76□□□□□ -0.37
RTN3-204ENST00000354497 FAM228AQ86W67 206 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 SIX5Q8N196 739 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 MRPL43Q8N983 215 aaKnown RBP12.76□□□□□ -0.37
RTN3-204ENST00000354497 CTCFLQ8NI51 663 aaPredicted RBP12.76□□□□□ -0.37
RTN3-204ENST00000354497 RIN2Q8WYP3 895 aaPredicted RBP12.76□□□□□ -0.37
RTN3-204ENST00000354497 SLC39A7Q92504 469 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 ACSF2Q96CM8 615 aaPredicted RBP12.76□□□□□ -0.37
RTN3-204ENST00000354497 CASD1Q96PB1 797 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 PSTPIP2Q9H939 334 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 JADE2Q9NQC1 790 aa12.76□□□□□ -0.37
RTN3-204ENST00000354497 CYP26B1Q9NR63 512 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms