RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 OPLAHO14841 1288 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 STAT6P42226 847 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 MAGEA1P43355 309 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 SCTRP47872 440 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 KRT79Q5XKE5 535 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 ERO1BQ86YB8 467 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 FBF1Q8TES7 1133 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 ZBED3Q96IU2 234 aaPredicted RBP11.86□□□□□ -0.51
LSM3-201ENST00000306024 KRT12Q99456 494 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 PNMA2Q9UL42 364 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 HPSEQ9Y251 543 aa11.86□□□□□ -0.51
LSM3-201ENST00000306024 PLIN4Q96Q06 1357 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 ANO9A1A5B4 782 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 MOCS3O95396 460 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 BMP6P22004 513 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 SLMAPQ14BN4 828 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 SNRNP48Q6IEG0 339 aaKnown RBP11.85□□□□□ -0.51
LSM3-201ENST00000306024 YTHDF3Q7Z739 585 aaKnown RBP11.85□□□□□ -0.51
LSM3-201ENST00000306024 TSEN2Q8NCE0 465 aaKnown RBP11.85□□□□□ -0.51
LSM3-201ENST00000306024 ATG4CQ96DT6 458 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 SEC16BQ96JE7 1060 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 TEPSINQ96N21 525 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 SH3GL2Q99962 352 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 TRIM4Q9C037 500 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 ZMYND12Q9H0C1 365 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 CSRNP2Q9H175 543 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 MMRN2Q9H8L6 949 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 RMND1Q9NWS8 449 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 NOVA2Q9UNW9 492 aaKnown RBP11.85□□□□□ -0.51
LSM3-201ENST00000306024 TRAF5O00463 557 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 ANP32DO95626 131 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 OR52Z1P0C646 297 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 PPP1R18Q6NYC8 613 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 BMP2KQ9NSY1 1161 aaPredicted RBP11.85□□□□□ -0.51
LSM3-201ENST00000306024 DDX25Q9UHL0 483 aaKnown RBP11.85□□□□□ -0.51
LSM3-201ENST00000306024 PCDHA6Q9UN73 950 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 TRPC6Q9Y210 931 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 PCDHA8Q9Y5H6 950 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 PITPNM2Q9BZ72 1349 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 PSMA7O14818 248 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 TAL1P17542 331 aaPredicted RBP11.85□□□□□ -0.51
LSM3-201ENST00000306024 OSBPP22059 807 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 AMPD2Q01433 879 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 DGKZQ13574 1117 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 NFRKBQ6P4R8 1299 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 CCHCR1Q8TD31 782 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 AENQ8WTP8 325 aaKnown RBP11.85□□□□□ -0.51
LSM3-201ENST00000306024 OSBPL9Q96SU4 736 aa11.85□□□□□ -0.51
LSM3-201ENST00000306024 IRF6O14896 467 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 BUB1O43683 1085 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 TMOD1P28289 359 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 TECP42680 631 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 HUNKP57058 714 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 AGBL1Q96MI9 1066 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.84□□□□□ -0.51
LSM3-201ENST00000306024 GBA2Q9HCG7 927 aaPredicted RBP11.84□□□□□ -0.51
LSM3-201ENST00000306024 NMRK2Q9NPI5 230 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 RIC8AQ9NPQ8 531 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 RNF146Q9NTX7 359 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 G3BP2Q9UN86 482 aaKnown RBP11.84□□□□□ -0.51
LSM3-201ENST00000306024 L3MBTL1Q9Y468 752 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 IVNS1ABPQ9Y6Y0 642 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 HIP1RO75146 1068 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 MYBL1P10243 752 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 POLE2P56282 527 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 PDCD2Q16342 344 aaPredicted RBP11.84□□□□□ -0.51
LSM3-201ENST00000306024 THEMIS2Q5TEJ8 643 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 ERMNQ8TAM6 284 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 KCNV2Q8TDN2 545 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 ZNF483Q8TF39 744 aaPredicted RBP11.84□□□□□ -0.51
LSM3-201ENST00000306024 IFT74Q96LB3 600 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 CHMP2AO43633 222 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 SP4Q02446 784 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 ACCSLQ4AC99 568 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 ARHGEF16Q5VV41 709 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 CLMNQ96JQ2 1002 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 NOX5Q96PH1 765 aa11.84□□□□□ -0.51
LSM3-201ENST00000306024 PYM1Q9BRP8 204 aaKnown RBP11.84□□□□□ -0.51
LSM3-201ENST00000306024 NHEJ1Q9H9Q4 299 aaPredicted RBP11.84□□□□□ -0.51
LSM3-201ENST00000306024 PHF20L1A8MW92 1017 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 RASSF9O75901 435 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 SETSIPP0DME0 302 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 CARSP49589 748 aaKnown RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 SNX1Q13596 522 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 PAPD7Q5XG87 772 aaKnown RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 GSDMAQ96QA5 445 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 SNX12Q9UMY4 172 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 ZC3H4Q9UPT8 1303 aaKnown RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 NAV1Q8NEY1 1877 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 MAST2Q6P0Q8 1798 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 PDE2AO00408 941 aaPredicted RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 USP2O75604 605 aaPredicted RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 SNHG28P0DPA3 235 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 LRRC23Q53EV4 343 aaPredicted RBP11.83□□□□□ -0.52
LSM3-201ENST00000306024 ANKRD20A8PQ5CZ79 823 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 WLSQ5T9L3 541 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 CCDC26Q8TAB7 109 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 KLHL29Q96CT2 875 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 MLXIPQ9HAP2 919 aa11.83□□□□□ -0.52
LSM3-201ENST00000306024 EHD2Q9NZN4 543 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms