RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 COL6A3P12111 3177 aa27.39■■□□□ 1.97
SSBP4-201ENST00000270061 FAM86B1E9PN63 330 aa27.38■■□□□ 1.97
SSBP4-201ENST00000270061 FAM86B2P0C5J1 330 aa27.38■■□□□ 1.97
SSBP4-201ENST00000270061 PLCG1P19174 1290 aa27.38■■□□□ 1.97
SSBP4-201ENST00000270061 NIPA1Q7RTP0 329 aa27.38■■□□□ 1.97
SSBP4-201ENST00000270061 AFAP1L1Q8TED9 768 aa27.38■■□□□ 1.97
SSBP4-201ENST00000270061 MTIF3Q9H2K0 278 aaKnown RBP27.38■■□□□ 1.97
SSBP4-201ENST00000270061 C17orf102A2RUQ5 167 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 PFKMP08237 780 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 SMIM10L2AP0DMW4 78 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 SMIM10L2BP0DMW5 78 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 RFC2P35250 354 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 ZNF200P98182 395 aaPredicted RBP27.37■■□□□ 1.97
SSBP4-201ENST00000270061 PTK7Q13308 1070 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 PRR16Q569H4 304 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 KRT79Q5XKE5 535 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 SARM1Q6SZW1 724 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 Q7L0L9 218 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 DEFB128Q7Z7B8 93 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 HERVK_113Q902F9 699 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 DHX38Q92620 1227 aaKnown RBP27.37■■□□□ 1.97
SSBP4-201ENST00000270061 AGO4Q9HCK5 861 aaKnown RBP27.37■■□□□ 1.97
SSBP4-201ENST00000270061 SLC9A2Q9UBY0 812 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 NFASCO94856 1347 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 HSFX4A0A1B0GTS1 333 aaPredicted RBP27.37■■□□□ 1.97
SSBP4-201ENST00000270061 HSFX3A0A1B0GWH4 333 aaPredicted RBP27.37■■□□□ 1.97
SSBP4-201ENST00000270061 GSTTP1A0A1W2PQM5 241 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 HIC1Q14526 733 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 RASIP1Q5U651 963 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 OTOP2Q7RTS6 562 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 STK17AQ9UEE5 414 aa27.37■■□□□ 1.97
SSBP4-201ENST00000270061 POTEMA6NI47 508 aa27.36■■□□□ 1.97
SSBP4-201ENST00000270061 GRB10Q13322 594 aa27.36■■□□□ 1.97
SSBP4-201ENST00000270061 CUL4BQ13620 913 aa27.36■■□□□ 1.97
SSBP4-201ENST00000270061 PLA2G4DQ86XP0 818 aa27.36■■□□□ 1.97
SSBP4-201ENST00000270061 RNPEPQ9H4A4 650 aa27.36■■□□□ 1.97
SSBP4-201ENST00000270061 IGLV3-22A0A075B6J6 115 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 RBL2Q08999 1139 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 MYO9BQ13459 2157 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 NCAPHQ15003 741 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 HS1BP3Q53T59 392 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 HYIQ5T013 277 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 LRRC15Q8TF66 581 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 STAMQ92783 540 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 ATP6V0A1Q93050 837 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 VWCEQ96DN2 955 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 PNMA5Q96PV4 448 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 RMND1Q9NWS8 449 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 GNAT1P11488 350 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 CKBP12277 381 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 SELPP16109 830 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 CASP1P29466 404 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 HOXC8P31273 242 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 ITGB3BPQ13352 177 aaPredicted RBP27.35■■□□□ 1.97
SSBP4-201ENST00000270061 FAM109BQ6ICB4 259 aaPredicted RBP27.35■■□□□ 1.97
SSBP4-201ENST00000270061 GLG1Q92896 1179 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 STK24Q9Y6E0 443 aa27.35■■□□□ 1.97
SSBP4-201ENST00000270061 GBF1Q92538 1859 aa27.34■■□□□ 1.97
SSBP4-201ENST00000270061 MYH9P35579 1960 aaKnown RBP27.34■■□□□ 1.97
SSBP4-201ENST00000270061 PLCB2Q00722 1185 aa27.34■■□□□ 1.97
SSBP4-201ENST00000270061 TMEM119Q4V9L6 283 aa27.34■■□□□ 1.97
SSBP4-201ENST00000270061 LRRC8DQ7L1W4 858 aa27.34■■□□□ 1.97
SSBP4-201ENST00000270061 SERINC5Q86VE9 423 aa27.34■■□□□ 1.97
SSBP4-201ENST00000270061 SNX29Q8TEQ0 813 aa27.34■■□□□ 1.97
SSBP4-201ENST00000270061 TRIM44Q96DX7 344 aaPredicted RBP27.34■■□□□ 1.97
SSBP4-201ENST00000270061 SMARCAD1Q9H4L7 1026 aa27.34■■□□□ 1.97
SSBP4-201ENST00000270061 ERAP1Q9NZ08 941 aa27.34■■□□□ 1.97
SSBP4-201ENST00000270061 CXXC1Q9P0U4 656 aaPredicted RBP27.34■■□□□ 1.97
SSBP4-201ENST00000270061 MSH4O15457 936 aa27.33■■□□□ 1.97
SSBP4-201ENST00000270061 SETQ01105 290 aaPredicted RBP27.33■■□□□ 1.97
SSBP4-201ENST00000270061 AMPD3Q01432 767 aa27.33■■□□□ 1.97
SSBP4-201ENST00000270061 ZNF697Q5TEC3 545 aa27.33■■□□□ 1.97
SSBP4-201ENST00000270061 PLIN2Q99541 437 aa27.33■■□□□ 1.97
SSBP4-201ENST00000270061 BLZF1Q9H2G9 400 aa27.33■■□□□ 1.97
SSBP4-201ENST00000270061 SETD4Q9NVD3 440 aa27.33■■□□□ 1.97
SSBP4-201ENST00000270061 ERCC5P28715 1186 aaPredicted RBP27.32■■□□□ 1.96
SSBP4-201ENST00000270061 TPM4P67936 248 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 MYL5Q02045 173 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 SPIRE1Q08AE8 756 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 KCNB1Q14721 858 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 WNT8BQ93098 351 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 CDK5RAP3Q96JB5 506 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 C7orf25Q9BPX7 421 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 EMSYQ7Z589 1322 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 KDM3AQ9Y4C1 1321 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 TREHO43280 583 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 PARNO95453 639 aaKnown RBP27.32■■□□□ 1.96
SSBP4-201ENST00000270061 RPN1P04843 607 aaKnown RBP27.32■■□□□ 1.96
SSBP4-201ENST00000270061 ACTN1P12814 892 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 ACTR2P61160 394 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 TRIM71Q2Q1W2 868 aaKnown RBP27.32■■□□□ 1.96
SSBP4-201ENST00000270061 GJA10Q969M2 543 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 NT5C3AQ9H0P0 336 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 AZI2Q9H6S1 392 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 BLOC1S4Q9NUP1 217 aa27.32■■□□□ 1.96
SSBP4-201ENST00000270061 IPO5O00410 1097 aaKnown RBP27.31■■□□□ 1.96
SSBP4-201ENST00000270061 MARK3P27448 753 aa27.31■■□□□ 1.96
SSBP4-201ENST00000270061 MTMR10Q9NXD2 777 aa27.31■■□□□ 1.96
SSBP4-201ENST00000270061 NRCAMQ92823 1304 aa27.31■■□□□ 1.96
SSBP4-201ENST00000270061 WDR81Q562E7 1941 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms