RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PAX3P23760 479 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 C8orf74Q6P047 294 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 PCSK9Q8NBP7 692 aaKnown RBP14.8□□□□□ -0.04
LDLR-201ENST00000252444 TXNDC16Q9P2K2 825 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 DBR1Q9UK59 544 aaKnown RBP14.8□□□□□ -0.04
LDLR-201ENST00000252444 WNT10BO00744 389 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 PFDN6O15212 129 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 DLATP10515 647 aaKnown RBP14.8□□□□□ -0.04
LDLR-201ENST00000252444 RARBP10826 455 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 PKP1Q13835 747 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 ZNF667Q5HYK9 610 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 PBKQ96KB5 322 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 MMS19Q96T76 1030 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 SEZ6LQ9BYH1 1024 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 TMEM260Q9NX78 707 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 GCNT4Q9P109 453 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 KRT10P13645 584 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 ARHGAP44Q17R89 818 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 PPP1R21Q6ZMI0 780 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 SFR1Q86XK3 245 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 EPN1Q9Y6I3 576 aaPredicted RBP14.8□□□□□ -0.04
LDLR-201ENST00000252444 PEX3P56589 373 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 TYW1BQ6NUM6 668 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 SWSAP1Q6NVH7 229 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 FAM43BQ6ZT52 329 aaPredicted RBP14.79□□□□□ -0.04
LDLR-201ENST00000252444 NBPF11Q86T75 865 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 TAX1BP1Q86VP1 789 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 TMEM106CQ9BVX2 250 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 RANBP17Q9H2T7 1088 aaKnown RBP14.79□□□□□ -0.04
LDLR-201ENST00000252444 CALB1P05937 261 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 NFKBIAP25963 317 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 PCBP1Q15365 356 aaKnown RBP eCLIP14.79□□□□□ -0.04
LDLR-201ENST00000252444 RNF180Q86T96 592 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 GCNAQ96QF7 691 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 SYNGAP1Q96PV0 1343 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 IGSF9BQ9UPX0 1349 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 NID2Q14112 1375 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 GOLGA8CPA6NN73 597 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 BTNL9Q6UXG8 535 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 ITIH6Q6UXX5 1313 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 HOXA2O43364 376 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 APBA1Q02410 837 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 SLFNL1Q499Z3 407 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 POTEAQ6S8J7 498 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 SRGAP1Q7Z6B7 1085 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 LRRC8AQ8IWT6 810 aa14.79□□□□□ -0.04
LDLR-201ENST00000252444 AK9Q5TCS8 1911 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 P3H4Q92791 437 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 TDP2O95551 362 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 VCAM1P19320 739 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 RASSF7Q02833 373 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 DPCR1Q3MIW9 517 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 TTBK2Q6IQ55 1244 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 HDXQ7Z353 690 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 TXNRD3Q86VQ6 643 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 PIK3CDO00329 1044 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 CAPN9O14815 690 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 RNASELQ05823 741 aaKnown RBP14.78□□□□□ -0.04
LDLR-201ENST00000252444 PPFIA1Q13136 1202 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 SYT10Q6XYQ8 523 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 SMIM5Q71RC9 77 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 SAR1BQ9Y6B6 198 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 FAM169AQ9Y6X4 670 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 E7EVH7 732 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 GGPS1O95749 300 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 DNA2P51530 1060 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 MAP2K1Q02750 393 aaPredicted RBP14.78□□□□□ -0.04
LDLR-201ENST00000252444 KRT39Q6A163 491 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 ARRDC4Q8NCT1 418 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 CCDC114Q96M63 670 aa14.78□□□□□ -0.04
LDLR-201ENST00000252444 POTEMA6NI47 508 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 F8W8V4 182 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 CD4P01730 458 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 GTF2H1P32780 548 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 KRT81Q14533 505 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 ZNF568Q3ZCX4 644 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 TRIM50Q86XT4 487 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 ATG4CQ96DT6 458 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 MEIS1O00470 390 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 TRAPPC3O43617 180 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 ZNF500O60304 480 aaPredicted RBP14.77□□□□□ -0.04
LDLR-201ENST00000252444 KCNJ6P48051 423 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 RHBDL3P58872 404 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 FAM193AP78312 1265 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 MSL3Q8N5Y2 521 aaKnown RBP14.77□□□□□ -0.04
LDLR-201ENST00000252444 BANK1Q8NDB2 785 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 TSC1Q92574 1164 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 TUBE1Q9UJT0 475 aa14.77□□□□□ -0.04
LDLR-201ENST00000252444 MSCO60682 206 aa14.77□□□□□ -0.05
LDLR-201ENST00000252444 CABYRO75952 493 aa14.77□□□□□ -0.05
LDLR-201ENST00000252444 ZNF280AP59817 542 aaPredicted RBP14.77□□□□□ -0.05
LDLR-201ENST00000252444 CDCA5Q96FF9 252 aa14.77□□□□□ -0.05
LDLR-201ENST00000252444 PPP2R2CQ9Y2T4 447 aa14.77□□□□□ -0.05
LDLR-201ENST00000252444 POTEB3A0JP26 581 aa14.77□□□□□ -0.05
LDLR-201ENST00000252444 DENND3A2RUS2 1198 aa14.77□□□□□ -0.05
LDLR-201ENST00000252444 MIF4GDA9UHW6 222 aaKnown RBP14.77□□□□□ -0.05
LDLR-201ENST00000252444 POTECB2RU33 542 aa14.77□□□□□ -0.05
LDLR-201ENST00000252444 KIF28PB7ZC32 967 aa14.77□□□□□ -0.05
LDLR-201ENST00000252444 OATP04181 439 aa14.77□□□□□ -0.05
LDLR-201ENST00000252444 POTEBQ6S5H4 581 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms