RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	RPN6	Q12377	434 aa		4.37	□□□□□ -1.71
EAR1	YMR171C	RAS2	P01120	322 aa	Known RBP	4.36	□□□□□ -1.71
EAR1	YMR171C	ARG81	P05085	880 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	AQY1	P0CD91	305 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	DCC1	P25559	380 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	STB6	P36085	766 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	RPF2	P36160	344 aa	Known RBP	4.36	□□□□□ -1.71
EAR1	YMR171C	GEX2	P36173	615 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	APE3	P37302	537 aa	Known RBP	4.36	□□□□□ -1.71
EAR1	YMR171C	FMP23	P38231	175 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	ARP1	P38696	384 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	YHR045W	P38775	560 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	VMA22	P38784	181 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	FHL1	P39521	936 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	ALD5	P40047	520 aa	Known RBP	4.36	□□□□□ -1.71
EAR1	YMR171C	IMD3	P50095	523 aa	Known RBP	4.36	□□□□□ -1.71
EAR1	YMR171C	ATP22	P50273	684 aa	Predicted RBP	4.36	□□□□□ -1.71
EAR1	YMR171C	LSG1	P53145	640 aa	Known RBP	4.36	□□□□□ -1.71
EAR1	YMR171C	TWF1	P53250	332 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	COG5	P53951	403 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	SPR6	Q01684	191 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	YPL107W	Q02873	248 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	PLP1	Q04004	230 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	PEX10	Q05568	337 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	YHC1	Q05900	231 aa	Known RBP	4.36	□□□□□ -1.71
EAR1	YMR171C	JLP1	Q12358	412 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	ICT1	Q12385	394 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	TRM10	Q12400	293 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	RIB3	Q99258	208 aa		4.36	□□□□□ -1.71
EAR1	YMR171C	COX1	P00401	534 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	HAP2	P06774	265 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	YML003W	P0CF16	290 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	AMD1	P15274	810 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	KGD1	P20967	1014 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	MRPL6	P32904	214 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	MTW1	P39731	289 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	YER034W	P40022	185 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	ALG8	P40351	577 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	UTP18	P40362	594 aa	Predicted RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	YIL161W	P40449	235 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	BUD13	P46947	266 aa	Predicted RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	BIR1	P47134	954 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	NQM1	P53228	333 aa	Predicted RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	IDP3	P53982	420 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	DBP9	Q06218	594 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	ARO10	Q06408	635 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	MCP2	Q06567	569 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	CYK3	Q07533	885 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	RCN2	Q12044	265 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	SWT1	Q12104	458 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	RMD5	Q12508	421 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	DCP1	Q12517	231 aa	Predicted RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	HXK2	P04807	486 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	GRR1	P24814	1151 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	OCA4	P25366	362 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	CRM1	P30822	1084 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	RPC34	P32910	317 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	FLO10	P36170	1169 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	RIB1	P38066	345 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	ECM13	P38195	257 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	LDB7	P38210	180 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	SLX1	P38324	304 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	IPT1	P38954	527 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	SOP4	P39543	234 aa	Predicted RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	TPA1	P40032	644 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	FCY21	P40039	528 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	DDI1	P40087	428 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	MEP1	P40260	492 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	IRC6	P43615	237 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	YJL043W	P47053	257 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	GPI8	P49018	411 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	REG1	Q00816	1014 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	YDR124W	Q04608	324 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	SNO4	Q04902	237 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	MFG1	Q07684	458 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	COS7	Q07788	383 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	THP1	Q08231	455 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	HSP33	Q08914	237 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	HSP32	Q08992	237 aa		4.35	□□□□□ -1.71
EAR1	YMR171C	THP3	Q12049	470 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	PKH2	Q12236	1081 aa	Known RBP	4.35	□□□□□ -1.71
EAR1	YMR171C	UBR1	P19812	1950 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	TIM9	O74700	87 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	ATP1	P07251	545 aa	Known RBP	4.34	□□□□□ -1.71
EAR1	YMR171C	NFT1	P0CE68	1218 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	RSR1	P13856	272 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	RFA2	P26754	273 aa	Known RBP	4.34	□□□□□ -1.71
EAR1	YMR171C	VBA2	P38358	474 aa	Known RBP	4.34	□□□□□ -1.71
EAR1	YMR171C	PET100	P38958	111 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	AST2	P39945	430 aa	Known RBP	4.34	□□□□□ -1.71
EAR1	YMR171C	GAB1	P41733	394 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	MEP2	P41948	499 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	RMD8	P43620	662 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	PRP24	P49960	444 aa	Known RBP	4.34	□□□□□ -1.71
EAR1	YMR171C	YPT32	P51996	222 aa	Known RBP	4.34	□□□□□ -1.71
EAR1	YMR171C	SMA1	Q02651	245 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	IRC15	Q02733	499 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	RRN5	Q02983	363 aa		4.34	□□□□□ -1.71
EAR1	YMR171C	YMR111C	Q04461	462 aa	Predicted RBP	4.34	□□□□□ -1.71
EAR1	YMR171C	ECM22	Q05958	814 aa	Predicted RBP	4.34	□□□□□ -1.71

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